Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25540 1314 / 0 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G02070 246 / 8e-67 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G18524 202 / 4e-53 ATMSH2, MSH2 MUTS homolog 2 (.1) AT3G24495 161 / 5e-40 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G20475 155 / 1e-38 ATMSH5 MUTS-homologue 5 (.1) AT4G17380 149 / 2e-36 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G24320 100 / 3e-21 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 92 / 1e-18 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 69 / 2e-11 DNA mismatch repair protein MutS, type 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121701 [exp] 263 / 3e-72 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 196 / 4e-51 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.011G089500 [exp] 167 / 2e-42 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.006G156314 [exp] 164 / 5e-41 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 162 / 2e-40 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.001G156200 [exp] 155 / 2e-38 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.008G191051 [exp] 99 / 7e-23 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.010G065000 [exp] 94 / 4e-19 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.012G005000 [exp] 89 / 8e-18 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005743 [exp] 1380 / 0 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027452 [exp] 469 / 1e-156 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027453 [exp] 308 / 3e-94 AT4G25540 248 / 9e-73 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 196 / 3e-51 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10010010 [exp] 191 / 3e-49 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10032469 [exp] 179 / 1e-45 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10017724 [exp] 163 / 2e-40 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10033095 [exp] 140 / 1e-33 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10007489 [exp] 137 / 6e-33 AT4G17380 1205 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10028966 [exp] 128 / 6e-31 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V CL0023 [poplar] [flax] PF01624 [poplar] [flax] MutS_I MutS domain I CL0023 [poplar] [flax] PF05188 [poplar] [flax] MutS_II MutS domain II CL0023 [poplar] [flax] PF05192 [poplar] [flax] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Potri.015G142900.1 pacid=42775392 polypeptide=Potri.015G142900.1.p locus=Potri.015G142900 ID=Potri.015G142900.1.v4.1 annot-version=v4.1 ATGGGCAAACAAAAACAACAAATAATTTCCCGTTTTTTCGCTCCCAAATCCAAACCCACCACCACTAGTCCATCACCATCACCACCACAAACAGCCCCTT CATCCTCCTCCTCTCCAAAAATCACAACAACAGTCGCCTTCTCTCCATCAAAACGCAATCTTCTTTCTACTCGCATAACTTCCACACCAAAAAGACCTAA ACTTTCACCTCACACACAAAACCCGCTTCCCTCTTTACACAAAAAATTCGTCGACAAACTCTTAGAACCTCAAACCCCTCAAACCCCACAACCTCAAAAC ACTCAAAACACTCAAAAGTTCACTCCTCTAGAACAACAAGTAGTTGACTTGAAACAAAGGTACCCCGATGTTCTTTTAATGATTGAAGTTGGTTACAAGT TTCGATTTTTCGGTGAAGACGCCGAGATTGCTGCTAGAGTTTTAGGTATTTATGCACATAAAGATCATAACTTTATGACCGCTAGTGTTCCAACTTTCCG ATTAAATGTCCATGTGAGAAGGTTAGTCAGTGAAGGTTATAAAGTTGGGGTTGTTAAACAGACTGAGACTGCGGCTATTAAGGCACATGGAGAGAATAAA AGTGGGCCATTTTGTAGAGGCTTATCGGCATTGTATACGAAAGCTACCTTGGAGGCTGCGGAGAATGTGGGAGGGGAAGAGGAGGAGTGTGGTGGTGAGA GTAATTATTTGTGTTGTGTAGTGGAGAAGGGTTTGGACTGTGGGGTTGAGGGTGGGGTTTTTGATGTGAGAGTTGGTGTTGTTGCGGTTGAGATTTCCAC AGGGGATGTTGTTTATGGAGAGTTTAATGATGGGTTTATGAGGAGTGGGCTGGAAGCTTTTGTTTTGAGCCTTGCTCCTGCTGAATTGCTTCTTGGTGAT CCACTTTCGAAACAAACAGAGAAGTTGCTACTGGCATATTCTGGACCTTCCTCAAATGTTCGTGTGGAGCGTGTCTCGCGAGATTGTTTCAGTGATGGTG GTGCACTTGCTGATGTGATGTCTTTATATGAGAATATGATTGAAGATAATCTAGGAGACAATGAAAAGCAAATGACAGATGCCAAAGAACAGGGGTCTTG TCACCTAGCAATTGAGGGAGTAATAAAAATGCCTGATTTGGCTGTGGAAGCATTGGCCTTAACTGTTCGCCACCTGAAACAATTTGGATTTGATAGAATG TTATGCCTTGGAGCATCTTTTCGGCCCTTCTCAAGCAACATGGAGATGAATCTTTCAGCCAATACACTCCAGCAATTAGAGGTTTTGAGAAATAACTCAG ATGGGTCTGAGTCTGGTTCCTTGCTGCATATCATGAATCATACTCTTACAATATATGGTTCAAGGCTACTCAGACATTGGGTGACTCACCCTTTATGTGA TAGAAACATGATATCCGCTCGTCTTGATGCTGTTTCTGAGATTGCAGAATGCATGGGATTCAGTAAAGATTCTCAGCGTGTAAGCGAACTTGATGAGGAT GATTCTGAAGTAGCAATTGTACAACCTGACTTGTATTATCTGCTTTCTGCTGTTTTGACTGCTTTGGGAAGATCACCTGATATTGAACGTGGAATAACAA GAATTTTCCATCGGACTGCAACTGCATCTGAATTTATTGCAGTTTTTCAAGCTATATTAGCTGCTGGAAAACAACTTAAGCGACTTTGCATTCAAGAGGA GCATAATTATGACGGAGTGGGATCAAAGACTGTGAAGTCAGTTCTTTTGAAAAGATTGATTTTGGCTGCTTCTTCCTCAAGTGTAGTTGGTAATGCTGCA AAACTATTGTCTACTCTAAACAAAGAAGCAGCTGAGCAAGGTGACCTGACAAACTTGATCATTATTTCTGATGACCAATTTCCAGAGGTTGCAAGAGCTC GGGAAGCTGTTCAATTTGCAAAGGAGAAATTGGATTCTTTAATTGGTTTGTATCGCAAGCAACTTCAGATGCGCAACTTGGAATTCATGAGTGTGTCTGG AACCACACATCTGATAGAGTTGCCCTTGGATTTCAAAGTTCCATTAAATTGGGTCAAGGTAAACAGTACCAAGAAAATGATTCGGTATCACCCGCCTGAA GTTTTGACTGCCTTAGACCAGCTATTACTCGCTAACGAGGAGCTCATGATTGTCTCCCGAGCTGCCTGGGATAGCTTTCTAAGGGGTTTTGGTATATATT ATGCTGAGTTCCGAGGTGCTGTTCAAGCTCTTGCCACTTTGGATTGTTTGTTCTCGTTTGCTACTCTTTTGAAAAATAAGAATTATGTCCGGCCCATGTT TGTGGATGACAGTGAACCTCTTCAGATAAACATTTGCTCTGGTCGCCATCCTGTCTTGGAGACAATTTTACAAGACAATTTTGTCCCGAATGACACAAAC TTGTGTGCAGATAAAGAGTATTGCCAGATTGTTACTGGACCCAATATGGGAGGAAAAAGTTGCTACATTCGCCAAGTTGCTCTTATTGCCTTGATGGCTC AGGTTGGTTCCTTTGTACCAGCATTGTCAGCAAAACTGCATGTGTTAGATGGCATCTACACCCGAATGGGGGCTTCTGACAGTATTCAACAAGGGAGAAG TACCTTTCTAGAAGAGCTGAGTGAGGCTTCTCATATACTCCACAAATGCACAGCGCAGTCACTGGTAATCATTGATGAGCTTGGTAGAGGCACAAGCACA TATGATGGTGAAGCTATTGCTTATGCTACATTATACCATCTACTGGATCAGAAAAGATGCATGGTCTTATTTGTAACCCACTACCCTAAAATTGTTGAGA TTAAAACTGAATTTCCAGGCTCTGTGGGGGCATACCATGTTTCATATTTGACCTCAGAAAAAAGCGAGGGTGCCATTGAGTCAACATGTGATACTGAAGA TGTCACTTACCTTTATAAGCTGGTGCCCGGTGTTTCAGAGAAGAGTTTTGGATTTAAGGTTGCTCAACTTGCTGAGCTACCTCCATCATGTATCAGAAGG GCCACTATCATGGCTGCAAGGCTGGAAGCTGTGTTAAGCAGCAGATTGGGAAATGAACAGTTGCTGGAAACTCTGCCAGTTCAGCAACAAGAAGAAGCAC AGGAGAATATGTTGAGATCTGATGTCAGAATCGAGAAGTCTGAAGACTCAACTGTTGCTTACAGGGAATTCTTTTCAAACTTAAAGTCTGCAATGTTTGA TGATGATGTTGCAAGAAGCTCCCAGTTTTTGGAGAAAGCGAGGAGCATCGCAAAGGAATTCTTAGCGAAGTAA
AA sequence Show only first row Show all	>Potri.015G142900.1 pacid=42775392 polypeptide=Potri.015G142900.1.p locus=Potri.015G142900 ID=Potri.015G142900.1.v4.1 annot-version=v4.1 MGKQKQQIISRFFAPKSKPTTTSPSPSPPQTAPSSSSSPKITTTVAFSPSKRNLLSTRITSTPKRPKLSPHTQNPLPSLHKKFVDKLLEPQTPQTPQPQN TQNTQKFTPLEQQVVDLKQRYPDVLLMIEVGYKFRFFGEDAEIAARVLGIYAHKDHNFMTASVPTFRLNVHVRRLVSEGYKVGVVKQTETAAIKAHGENK SGPFCRGLSALYTKATLEAAENVGGEEEECGGESNYLCCVVEKGLDCGVEGGVFDVRVGVVAVEISTGDVVYGEFNDGFMRSGLEAFVLSLAPAELLLGD PLSKQTEKLLLAYSGPSSNVRVERVSRDCFSDGGALADVMSLYENMIEDNLGDNEKQMTDAKEQGSCHLAIEGVIKMPDLAVEALALTVRHLKQFGFDRM LCLGASFRPFSSNMEMNLSANTLQQLEVLRNNSDGSESGSLLHIMNHTLTIYGSRLLRHWVTHPLCDRNMISARLDAVSEIAECMGFSKDSQRVSELDED DSEVAIVQPDLYYLLSAVLTALGRSPDIERGITRIFHRTATASEFIAVFQAILAAGKQLKRLCIQEEHNYDGVGSKTVKSVLLKRLILAASSSSVVGNAA KLLSTLNKEAAEQGDLTNLIIISDDQFPEVARAREAVQFAKEKLDSLIGLYRKQLQMRNLEFMSVSGTTHLIELPLDFKVPLNWVKVNSTKKMIRYHPPE VLTALDQLLLANEELMIVSRAAWDSFLRGFGIYYAEFRGAVQALATLDCLFSFATLLKNKNYVRPMFVDDSEPLQINICSGRHPVLETILQDNFVPNDTN LCADKEYCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSEASHILHKCTAQSLVIIDELGRGTST YDGEAIAYATLYHLLDQKRCMVLFVTHYPKIVEIKTEFPGSVGAYHVSYLTSEKSEGAIESTCDTEDVTYLYKLVPGVSEKSFGFKVAQLAELPPSCIRR ATIMAARLEAVLSSRLGNEQLLETLPVQQQEEAQENMLRSDVRIEKSEDSTVAYREFFSNLKSAMFDDDVARSSQFLEKARSIAKEFLAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	0	1
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	1.41	0.9101
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	2.44	0.8939
AT1G72390			unknown protein		Potri.001G165800 [exp]	3.16	0.9062
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	5.65	0.8912
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	6.32	0.8839
AT5G43920			transducin family protein / WD...		Potri.014G194100 [exp]	8.06	0.8731
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	8.77	0.8802
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	8.94	0.8911	TTN8.2
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	9.94	0.8837
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	10.09	0.8882

Compare expression of checked genes

Potri.015G142900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.