Plant FIBer expression Database

Potri.015G143000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28560 361 / 5e-122 SRD2 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041957
[exp]
436 / 2e-149 AT1G28560 345 / 2e-115 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2)
Lus10017968
[exp]
370 / 3e-124 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12251 zf-SNAP50_C snRNA-activating protein of 50kDa MW C terminal
Representative CDS sequence
>Potri.015G143000.3 pacid=42774890 polypeptide=Potri.015G143000.3.p locus=Potri.015G143000 ID=Potri.015G143000.3.v4.1 annot-version=v4.1
ATGAAAGAGTCAAGCGAAGGGGAGAATGAATCAATTGCTCATGGTGGACCCATATACGTTCCCAATTTGGTGGGTCCTCTCACTACAGTTCCTGACTTCC
AAGCTGCTCTTCTCAGTGAGCTTCAGAATTTGCAGTCTGAACTGTCTTTGGATTCTTCAGAACTCCGCGATGACATTGATCTTTCGGTTGATGAGCTTAA
AATTTTTAGCGAGGAAGAGTTGGTAGATATGGCCTTGAAAGAAGCTTTTAAGGATGGTGAGAAAACTGGAAGTTCCCCAGAGCCCTTTGTAGAACACTCA
AATGCAAGAAGAGAAGACGACCTTAGAATGTGCAGCAATAAAGATTCATGCTCACAAAGCTCTAGAAGAAGAAGGGACACTTCAACTCCTCTGGAATTGT
CAAATGGATCTCATTCTAGCACCAGTTGTAATAGAGCTACTATTAATAGCAACAATTCAAAGAGTGGAAAGAGAAGAAAGTCCAATAAGCATGATGTTAA
TGAGAGTTACCTGATGAAGGTGGATGATCTGGTAAAAATAAAACAAAAACAGGATCAAGACAAAGCAATGACTCGTCTGCATTCCTTCAATTGCAAGATC
AATTACAGTGGCATTACTTCTTTAAATAGAACCAACACAATGCAATCTCTCAGGTCTACAAATTTTGGAAAAAAGCCGAAGTCCTCAGACCTTCAAGAAC
ACATAGCTGTGATGCTTCCAGAGGTTGTTATTTGCGTTGAGATTTACCACTGCATTCGTAAATGGTTTAAGACTCAAGAGTTCTTGGTTCTAGGAGGACA
AACCTTGACTGAAATGAGGGACAAGATTTATTGCTTGACAGACCAGATGATGCAGAAGGCAGGGCAGCATGATCCTTCAGGATATTTTCTTGTAGAAGAT
GTATTTTGCAATGATTTGAGAGATACATCTGCTATAGATTATAGTGAACCTATAATTGATTGGCTTAGAAACAAAAAAGCTGATGCTTTTAGAAAGTGGG
AGTGTATCATAAGTGGTGACTTGCAACAAAAGCAGAAAGCAGTTTTAGGCGAATCAACCACTCCTTGTTTGCCTCAATTTAGACGTCGCGACATGCAGAA
CACACGGTTTTGTGACTTGAGATTTCGTCTTGGTGCAGGATATCTTTACTGTCACCAGGGGGATTGTAAGCATACAATTATATTCAGAGACATGAGGTTG
ATTCATCCTGATGATTTACAAAATCGCGTAGCGTATCCTATAGTCAGTTTTCAAATAAAATTTCGTACCCAGAAATGCATGGTATGCAAGGTTTATAGAG
CTGTAAAGGTGACTGTGGATGACAAGTGGGCCCCAGATAACCCCTGCTATTTCTGCAATGATTGCTATTACCTTCTTCACCACTCTGAGAATGGCTCTCT
ACTGTACAGTGGGTTCTCAGCATATGATTATGTCCATGATTAA
AA sequence
>Potri.015G143000.3 pacid=42774890 polypeptide=Potri.015G143000.3.p locus=Potri.015G143000 ID=Potri.015G143000.3.v4.1 annot-version=v4.1
MKESSEGENESIAHGGPIYVPNLVGPLTTVPDFQAALLSELQNLQSELSLDSSELRDDIDLSVDELKIFSEEELVDMALKEAFKDGEKTGSSPEPFVEHS
NARREDDLRMCSNKDSCSQSSRRRRDTSTPLELSNGSHSSTSCNRATINSNNSKSGKRRKSNKHDVNESYLMKVDDLVKIKQKQDQDKAMTRLHSFNCKI
NYSGITSLNRTNTMQSLRSTNFGKKPKSSDLQEHIAVMLPEVVICVEIYHCIRKWFKTQEFLVLGGQTLTEMRDKIYCLTDQMMQKAGQHDPSGYFLVED
VFCNDLRDTSAIDYSEPIIDWLRNKKADAFRKWECIISGDLQQKQKAVLGESTTPCLPQFRRRDMQNTRFCDLRFRLGAGYLYCHQGDCKHTIIFRDMRL
IHPDDLQNRVAYPIVSFQIKFRTQKCMVCKVYRAVKVTVDDKWAPDNPCYFCNDCYYLLHHSENGSLLYSGFSAYDYVHD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28560 SRD2 SHOOT REDIFFERENTIATION DEFECT... Potri.015G143000
[exp]
0 1
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Potri.018G103700
[exp]
7.07 0.8528
Potri.018G145600
[exp]
8.12 0.8794
AT1G79080 Pentatricopeptide repeat (PPR)... Potri.011G144300
[exp]
8.54 0.8816
Potri.018G138206
[exp]
13.22 0.8665
AT3G20540 PolIB, POLGAMMA... polymerase I B, polymerase gam... Potri.001G421300
[exp]
15.49 0.8509
AT2G18790 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B ... Potri.008G105200
[exp]
16.30 0.8344 Pt-PHYB.1
AT1G10910 EMB3103 EMBRYO DEFECTIVE 3103, Pentatr... Potri.003G019000
[exp]
16.88 0.8424
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.017G124500
[exp]
18.33 0.8480
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
21.42 0.8548
AT1G03160 FZL FZO-like (.1.2) Potri.005G209200
[exp]
21.70 0.8741

Potri.015G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.