Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25550 386 / 7e-139 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) AT4G29820 241 / 2e-81 CFIM-25, ATCFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140301 [exp] 230 / 3e-78 AT4G25550 208 / 5e-70 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.006G146400 [exp] 232 / 8e-78 AT4G29820 292 / 2e-101 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014987 [exp] 409 / 7e-148 AT4G25550 383 / 8e-138 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10038867 [exp] 265 / 2e-90 AT4G25550 245 / 1e-82 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10027624 [exp] 171 / 1e-53 AT4G29820 228 / 3e-76 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10011944 [exp] 139 / 4e-41 AT4G29820 207 / 1e-67 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF13869 [poplar] [flax] NUDIX_2 Nucleotide hydrolase
Representative CDS sequence Show only first row Show all	>Potri.015G143300.1 pacid=42776598 polypeptide=Potri.015G143300.1.p locus=Potri.015G143300 ID=Potri.015G143300.1.v4.1 annot-version=v4.1 ATGGTTGGGGCAGGGTCAGCGGTGGTGAACACGTACCCTTTATCGAGCTACACATTCGGTACTAAAGAACCCAAGATGGAGAAAGACACTTCTGTGGCGG ATCGCCTTGCTCGCATGAAAGTCAATTATATGAAAGAGGGGATGAGGACCAGTGTTGAAGCTATTTTGCTGGTACAGGAACACAATCATCCTCACATACT TCTTCTGCAAATTGGAAACACATTCTGCAAACTTCCAGGTGGGCGTTTGAAGCCTGGAGAGAATGAAATTGAGGGTTTGAAAAGAAAGCTGACGAGCAAG CTTGGAGCTAATTCACCTGCTCTTGTGCCAGACTGGCAGATTGGTGAATGTGTGGCTACCTGGTGGAGGCCAAACTTTGAAACCATTATGTATCCATATT GCCCTCCCCACATAACAAAGCCCAAGGAGTGCAAGAAACTTTATCTTGTTCACTTATCTGAAAGGGAGTACTTTGCAGTGCCAAAAAATTTGAAACTGCT TGCTGTGCCATTGTTTGAACTCTATGATAATGTGCAGAGATATGGACCAGTTATATCAACCATTCCTCAACAACTCTCAAGATTCCAGTTCAACATGATT ACTACTTGA
AA sequence Show only first row Show all	>Potri.015G143300.1 pacid=42776598 polypeptide=Potri.015G143300.1.p locus=Potri.015G143300 ID=Potri.015G143300.1.v4.1 annot-version=v4.1 MVGAGSAVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSK LGANSPALVPDWQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI TT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25550			Cleavage/polyadenylation speci...		Potri.015G143300 [exp]	0	1
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.008G164900 [exp]	6.32	0.8570
AT3G06050		PRXIIF, ATPRXII...	peroxiredoxin IIF (.1)		Potri.019G024000 [exp]	10.48	0.8614	PtrcPrxIIF,Pt-PRX.1
AT1G49510		EMB1273	embryo defective 1273 (.1)		Potri.005G149500 [exp]	13.26	0.8496
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126600 [exp]	16.97	0.8179
AT1G29040			unknown protein		Potri.011G064600 [exp]	18.33	0.7876
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.002G220500 [exp]	22.27	0.8183
AT3G25805			unknown protein		Potri.010G127200 [exp]	27.49	0.8433
AT4G23900			Nucleoside diphosphate kinase ...		Potri.001G091001 [exp]	29.93	0.8323
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Potri.001G330900 [exp]	34.20	0.7870	SOX.1
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	34.29	0.8297	Pt-EU3.1

Compare expression of checked genes

Potri.015G143300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.