Plant FIBer expression Database

Potri.015G143800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52280 594 / 0 Myosin heavy chain-related protein (.1)
AT1G63300 417 / 5e-130 Myosin heavy chain-related protein (.1)
AT5G41140 338 / 5e-101 Myosin heavy chain-related protein (.1.2)
AT1G22060 132 / 4e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G141200
[exp]
842 / 0 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1)
Potri.003G124600
[exp]
491 / 6e-157 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1)
Potri.001G106700
[exp]
337 / 2e-100 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1)
Potri.005G170066
[exp]
142 / 4e-34 AT1G22060 1031 / 0.0 unknown protein
Potri.002G091700
[exp]
135 / 5e-32 AT1G22060 1546 / 0.0 unknown protein
Potri.006G120400
[exp]
84 / 4e-16 AT1G22060 121 / 2e-27 unknown protein
Potri.008G029800
[exp]
83 / 6e-16 AT1G22060 117 / 5e-26 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039218
[exp]
750 / 0 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1)
Lus10027462
[exp]
740 / 0 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1)
Lus10038860
[exp]
723 / 0 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1)
Lus10014980
[exp]
662 / 0 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1)
Lus10008012
[exp]
307 / 3e-89 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2)
Lus10024517
[exp]
302 / 3e-87 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2)
Lus10001481
[exp]
271 / 8e-76 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2)
Lus10008482
[exp]
204 / 1e-53 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1)
Lus10020915
[exp]
131 / 1e-30 AT1G22060 985 / 0.0 unknown protein
Lus10033461
[exp]
128 / 1e-29 AT1G22060 978 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G143800.1 pacid=42775314 polypeptide=Potri.015G143800.1.p locus=Potri.015G143800 ID=Potri.015G143800.1.v4.1 annot-version=v4.1
ATGTTCAAGTCATGGAGGAACGACAAGAAGAAGATCAAAGCTACATTCAAACTGCAATTTCAGGCAACTCAGGTGCCACATCTAAAGAAACCTGCCTTGA
CAATATCCTTGGTGCCAGAGGATGTTGGAAAGACAACATTCAAACTAGAGAAAGCTGCAGTTCAGGATGGAATCTGTTCATGGGACAATCCGGTTTATGT
AACCGTGAAGCTCATCAAGGAGCCAAAATCAGGAATACTGCATGAGAAAATATACCATTTCATTGTTGCAAGTGGGTCATCCAAGTCAGGTTATCTGGGA
GAAGCTTCAATTGACTTTGCAGATTTTGCTGATGAACCCGAGCCATTGACTGTCTCCCTGCCCCTTAAATTTGCCAACTCTGGTGCAGTTCTACATGTGA
CTATTCAGAAGATGCAGGGAGATGTTGATCCAAGAAAAATTGGAGACAATGGAGATCCTGTACTTTCTCAAGACCGAAGCTTGAAAAGCCAGCAGAGCAA
TGACCATACAGATGAAAATGATGAAAGTTTTACTGAAGACAGGGACTTGAACATTCTTTTATCACAGAATTCTGAACAAGAAAGCAGCTTCAGATCATCT
GTTGGGGGCAATTCTAGCTTCAAATCAATTCTCAGACAAGACTCAATGCCTCCAAAGGGTGCAGTTGATGGCATCACAACAAAAAACCGCTTGCATCGTA
GAACAAGCACAGATTGGTCAATGGGTTCAAGGTCAGATGGAAGTTTAGTTGGCTCAACAAACAGCCCTGAACAGAGCCTTCCAAGAGAGTTTCAAGAAGC
TTCAGATGAAACCGTTGAAAGACTGAAAAGTGAATTATCTAGTCTAATGAGGCAGTCAGAATTATCAGAACTAGAATTACAGACTCTTCGGAAACAGATT
ACCAAAGAGAGTAGAAGGGGGCAGGATTTGTCAAGACAGGTTAAGGAACTTGAAGAGGAAAGAGATGAACTCAAAACAGAATGTGAGCAGGTCAAGTCTT
CAAGAAAATCTGTTGAAGAAGAATCCCTGAATCAATTGCGAGCCGAGTACGAGGATTCTTTGGTTCAGCTAGAAGAAGTCAGGCGAGAGCTTAGTCATCA
AAAGGATTTGAACACCAATCTTAAGTTGCAACTCCAGAAAACACAAGATTCAAATTCTGAGTTGATTCTTGCAGTGGGAGACCTTGATGAAATGCTGGAG
GAAAAAAAAGGGGAAATATCTTGTCTGTCCAGCAAGCTAGACGAGGTTCAGGAGAAAAACTGCAAATGCAGCATGAAAGAGGACACAGATCAACATGCAG
TGCTTGCACCGGAAGAAAAGGCTAGGGAAGATGATGAATTATGTCTGCTGAAGCAAAGGGTCATAGACCTATCCGATGAAATTGAGGTCCACAGAGAAAA
TAGAGAAAAACTGGAGAATTATATCGAACAACTCACACAGGACTATGAGAATCTAAAGCAGGAAAACTATGATGTATCTTCCAAGTTAGAGCAGAGCAAG
ATACAAGAACACAAATCGTCAGAATCTTTGGCTACCATTAAAGAACTTGAATCACAGGTACAAAGATTAGAGGAAAGATTGAAGACGCAAACACAAGAAT
TCTCAGAATCTTTGGTTTCCATCAATGAACTGGAAATTCAGGTCAAAGGGTTGGGGAAAGAACTGGAAAAACAGGCACAAGGATTTGAAAATGACCTTGA
TGCCATGACACATGCCAGAATTGAGCAGGAACAGAGAGCTATCCGTGCAGAAGAGGCCTTGAGGAAGACAAGGTGGAAAAATGCTGTTACAGCAGAGCGG
ATACAGGAAGAATTCAGAAAACTTTCTGTGGAAATGGCAGGCAAGTTTGATGAGAATGAGAAGCTGACAAAGAAATCAATATCAGAAGCTGATGAACTCC
GAGCACAGAACATAATTCTGGAAGAGAATCTTCAGAAAGCTAACGAAGAGCTTGCAGTGGTGATGGACCAGAAGGGAGTAAAAATGGAAGAACTATCAGT
GCAACTAGATTTGAAGACAAAACATGTAGAGCAGATGTCAGTGGAATTAGAAGATGCTTCCAACCAACTGAAGCAAGGAGGAGAAATGCAAGAGGCTTTC
CAAGTTGAAATTCAAATGCTGAAAAAGGAGATAGAGACACTCAGAAAAGAGAAGAATGACATCTCTGAGCAGGAAAACGTGAACTTAAGAGATGAAACTG
AGAAATTGAAGACATCTTGTGAAGAAACAAATATACTAACAGAAAGATGGAAAAGAGAAAGGGAGGAAATAGAGGAAAAATTTGCATCGACAAAGAAGGA
AGCAGAAAACACAAGGCAAGAATTATTCAATGTGAGGTCGTTAAAGGATGAAAAAGAGGCAATGATCAAGAACCTTTCATCGCAACTTCAAAGCCTCAGA
GATCAGCAGATTGCGTTAAAACATAGCCTGTCCGAAGAAGAATGCGAGAAAGAAAAACTGCAGCAACAAGTAATCAAATTAAAGGGTGAACTGCAAAAGA
AGGAACATGGAAATACTAGTGTCATGGAGAAGCTCTCTTTTTCAGATGAAAAGAACTTGACTCCAATGGACGATGAAATGCAGATGAACGGAAGAAAGGG
TATTGAAAGAAAAGCAAGAACTTGCTCAAAGGAAGAACTAGTAGTGGGCACTTTCCACCTAATGGATGAGGGTAACCTAACTGAACTGTTGACAGAAATG
GCTCAGCTAAAAGAAAAGAACAAATGTATGGAAATTGAGCTAAAAGAAATGCAAGAGAGATACTCAGAGATCAGCCTCAAATTTGCAGAAGTAGAAGGTG
AAAGGCAACAGCTTGTCATGACTGTACGAAACCTCAAGAATGGTAAGAAAAGCTAG
AA sequence
>Potri.015G143800.1 pacid=42775314 polypeptide=Potri.015G143800.1.p locus=Potri.015G143800 ID=Potri.015G143800.1.v4.1 annot-version=v4.1
MFKSWRNDKKKIKATFKLQFQATQVPHLKKPALTISLVPEDVGKTTFKLEKAAVQDGICSWDNPVYVTVKLIKEPKSGILHEKIYHFIVASGSSKSGYLG
EASIDFADFADEPEPLTVSLPLKFANSGAVLHVTIQKMQGDVDPRKIGDNGDPVLSQDRSLKSQQSNDHTDENDESFTEDRDLNILLSQNSEQESSFRSS
VGGNSSFKSILRQDSMPPKGAVDGITTKNRLHRRTSTDWSMGSRSDGSLVGSTNSPEQSLPREFQEASDETVERLKSELSSLMRQSELSELELQTLRKQI
TKESRRGQDLSRQVKELEEERDELKTECEQVKSSRKSVEEESLNQLRAEYEDSLVQLEEVRRELSHQKDLNTNLKLQLQKTQDSNSELILAVGDLDEMLE
EKKGEISCLSSKLDEVQEKNCKCSMKEDTDQHAVLAPEEKAREDDELCLLKQRVIDLSDEIEVHRENREKLENYIEQLTQDYENLKQENYDVSSKLEQSK
IQEHKSSESLATIKELESQVQRLEERLKTQTQEFSESLVSINELEIQVKGLGKELEKQAQGFENDLDAMTHARIEQEQRAIRAEEALRKTRWKNAVTAER
IQEEFRKLSVEMAGKFDENEKLTKKSISEADELRAQNIILEENLQKANEELAVVMDQKGVKMEELSVQLDLKTKHVEQMSVELEDASNQLKQGGEMQEAF
QVEIQMLKKEIETLRKEKNDISEQENVNLRDETEKLKTSCEETNILTERWKREREEIEEKFASTKKEAENTRQELFNVRSLKDEKEAMIKNLSSQLQSLR
DQQIALKHSLSEEECEKEKLQQQVIKLKGELQKKEHGNTSVMEKLSFSDEKNLTPMDDEMQMNGRKGIERKARTCSKEELVVGTFHLMDEGNLTELLTEM
AQLKEKNKCMEIELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKNGKKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52280 Myosin heavy chain-related pro... Potri.015G143800
[exp]
0 1
AT1G04850 ubiquitin-associated (UBA)/TS-... Potri.001G316400
[exp]
2.00 0.9112
AT4G36520 Chaperone DnaJ-domain superfam... Potri.005G120700
[exp]
2.00 0.9253
AT1G20970 unknown protein Potri.006G191500
[exp]
2.23 0.8941
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.015G130701
[exp]
3.46 0.9065
AT5G52280 Myosin heavy chain-related pro... Potri.012G141200
[exp]
3.60 0.8670
AT1G58110 bZIP Basic-leucine zipper (bZIP) tr... Potri.004G219100
[exp]
7.93 0.8729
AT5G04990 ATSUN1 ARABIDOPSIS SAD1/UNC-84 DOMAIN... Potri.010G247900
[exp]
8.24 0.8595
AT5G03110 unknown protein Potri.016G086900
[exp]
9.16 0.8914
Potri.016G091300
[exp]
9.89 0.8869
AT1G19430 S-adenosyl-L-methionine-depend... Potri.002G260600
[exp]
10.58 0.8839

Potri.015G143800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.