Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52300 92 / 1e-19 LTI65, RD29B RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2) AT4G25580 86 / 1e-17 CAP160 protein (.1) AT3G46750 50 / 2e-06 unknown protein AT5G52310 49 / 7e-06 LTI140, LTI78, RD29A, COR78 RESPONSIVE TO DESSICATION 29A, LOW-TEMPERATURE-INDUCED 78, COLD REGULATED 78, low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141300 [exp] 432 / 3e-147 AT5G52300 164 / 2e-43 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2) Potri.009G035300 [exp] 50 / 2e-06 AT3G46750 170 / 1e-48 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004979 [exp] 46 / 6e-05 AT3G46750 57 / 1e-08 unknown protein Lus10038862 [exp] 45 / 0.0002 AT5G52300 76 / 8e-14 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G143950.1 pacid=42775799 polypeptide=Potri.015G143950.1.p locus=Potri.015G143950 ID=Potri.015G143950.1.v4.1 annot-version=v4.1 ATGGAGTCACAAATGGCACGCCCACATGATTTTCATGACCATGAACATGGTCCCAACAATGTTGGACTGCATCCTGAGGGTGAAGATGAGCATCGCCATG AGAAGAAGTCAGTGTTGAAGAAAGTGAAGGAAAAAGTCAAATTACATGGTCATGGCCAGGAAGAACATCATGAAGTTCATGTGCCTGATGATCATGACTT GTATGAGGAAGATGATGACGAGGATGAAGAAATGGTTGGGGACCCAGAAGTTCATGGAGCCTCAGCCTATAGTTCTGCTTCACTTAGAAGCTCAGCCCAT GGACAAGGGGGAAGGTTAGGTGGCCCTAGGACATATTATGGAGGTCCAACAACAATGCAAGAAGAACATACAGGCAGTGATCCCATAAAGAGCTCTGTTC TTGGACAAGAGGAAGATGAGTCAGCACCACCAAAGGTTCTTCTCGAAAGGACAACTGCTATTAAAGAAGTACCTCATGCCCCAGTTAATTCGCCTGCATC TATTTCTCCTGCTGATCCCGTTAAAGGTTTTGTTCATGAACAAGAGAGGATTCTAGGGCAACCTGAAGTTAATTTGGAAGTACCAGCTGGAATAACTCCA ATGCTTCAGTCTTTTGACAAAATGAATATCTATGATGATTCAAAACAAGGAGAAAAAAAGAACTCACCTGTCAGACCGCGTGATGCTCAGCCCTCTATGT TTCCCACTGGGAGCCATGACCAATTTTCTGCAGAACCAACTCCCCCAATTTCCATTAACCCCAAAGAGAACCCAGAATCAGCTTCCAAGCTTGGATATAT AGAGAGAGACGATAATATTCAAGAACATGAAGTGGCACATGAAGGACAAAATGCTGCGAAGCCAGCATCTTCAGTGGAATATGGAAAGAAAGTTGCTGCA ACTGTGACAGAGAAACTCACTCCAGTGTATGAAAAAGTTGTTGGTTTAGGCAGTACTGTGATGTCAAAAGTCTATGGCAATACTAACACTAGCACCAACA CCAGCAATGAAGCAGACAACATGATTAAAGGGAAAGATAAAGGGGTGTCAGTGAAAGACTATTTCGTGGAGAAGTTGAGTCCTGGAGAAGAAGACAGGGC GCTTTCTGAAGTTATTTCGGAGACTTTGAACAAGGGGAAGGCTGAGGCAGTGACAGAGTCGGAGGAGGTGAAGAGGAGGTTAGAGAGTAGTAGTACAGAA GAGTATTCTGGTGAAAGGGTGGATTCAGGCTCTGTGCATATTCCTGATAAAACTGTGGTTGGTAAGCTTAAAGGTGCTGTTGGTTCTTTGTTTGTCAAAG GTGAAGGGTCCAGGGCATCTCAGCAGCATCCACTTAGTTCCTCCAATGCAGTTACTCAAGCGCTTTCTTCTACTTATGCTAGTGGAGAAGAAATAGGGGA TAGGAGACTTCAGGAGTCAGGAAACTGA
AA sequence Show only first row Show all	>Potri.015G143950.1 pacid=42775799 polypeptide=Potri.015G143950.1.p locus=Potri.015G143950 ID=Potri.015G143950.1.v4.1 annot-version=v4.1 MESQMARPHDFHDHEHGPNNVGLHPEGEDEHRHEKKSVLKKVKEKVKLHGHGQEEHHEVHVPDDHDLYEEDDDEDEEMVGDPEVHGASAYSSASLRSSAH GQGGRLGGPRTYYGGPTTMQEEHTGSDPIKSSVLGQEEDESAPPKVLLERTTAIKEVPHAPVNSPASISPADPVKGFVHEQERILGQPEVNLEVPAGITP MLQSFDKMNIYDDSKQGEKKNSPVRPRDAQPSMFPTGSHDQFSAEPTPPISINPKENPESASKLGYIERDDNIQEHEVAHEGQNAAKPASSVEYGKKVAA TVTEKLTPVYEKVVGLGSTVMSKVYGNTNTSTNTSNEADNMIKGKDKGVSVKDYFVEKLSPGEEDRALSEVISETLNKGKAEAVTESEEVKRRLESSSTE EYSGERVDSGSVHIPDKTVVGKLKGAVGSLFVKGEGSRASQQHPLSSSNAVTQALSSTYASGEEIGDRRLQESGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.015G143950 [exp]	0	1
AT2G24370			Protein kinase protein with ad...		Potri.011G008356 [exp]	4.24	0.8100
					Potri.011G008676 [exp]	5.47	0.8000
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G013200 [exp]	7.34	0.7382
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G136000 [exp]	7.61	0.6565
AT2G22830		SQE2	squalene epoxidase 2 (.1)		Potri.015G121201 [exp]	9.16	0.6566
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Potri.015G117350 [exp]	10.19	0.7459
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	12.40	0.7332	LAC90b
AT2G34930			disease resistance family prot...		Potri.015G024800 [exp]	15.49	0.7035
AT1G15780			unknown protein		Potri.003G025500 [exp]	18.02	0.7228
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.014G041532 [exp]	19.49	0.6941

Compare expression of checked genes

Potri.015G143950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.