Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23760 96 / 2e-26 Copper transport protein family (.1) AT1G01490 51 / 2e-08 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 39 / 0.0004 Copper transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141500 [exp] 100 / 6e-28 AT5G23760 92 / 1e-25 Copper transport protein family (.1) Potri.001G099500 [exp] 57 / 8e-11 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 55 / 4e-10 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 53 / 2e-09 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 54 / 3e-09 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 52 / 5e-09 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 52 / 7e-09 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 52 / 1e-08 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 50 / 2e-08 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039224 [exp] 81 / 9e-21 AT5G23760 81 / 1e-21 Copper transport protein family (.1) Lus10027468 [exp] 67 / 2e-13 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10001485 [exp] 53 / 1e-09 AT5G23760 54 / 9e-11 Copper transport protein family (.1) Lus10028762 [exp] 54 / 2e-09 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 52 / 2e-08 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 52 / 4e-08 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 51 / 6e-08 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10036395 [exp] 50 / 1e-07 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10024672 [exp] 47 / 4e-07 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 47 / 1e-06 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G144200.1 pacid=42775078 polypeptide=Potri.015G144200.1.p locus=Potri.015G144200 ID=Potri.015G144200.1.v4.1 annot-version=v4.1 ATGGATCCACGCACACACATCTATTTGCATGTAATCCACCACCGCCACCACCTCACATCTTCAAGCCCCTTTGTGTATAGATATAAAGCCCACCACAAAT TTTTCAAGCACTTAGACTTCTCTTCCCTTCCTCTACCCTCTCTTCTAATGGCTCAGCAGAAGGTGGTGTTAAAGGTCTTGACCATGACTGATGATAAGAC AAAGAAGAAAGCAATAGAAGCCGCTGCTGATATTTTTGGAGTTGATTCCATAGCAGTGGATCTCAAAGATCAGAAGCTAACAGTGATAGGTCTGATGGAT ACAGTGGCAGTGGTGAAGAAGCTGAAGAAAGTAGGGAAAGTGGACATAGTTTCAGTTGGACCTGCTAAAGAAGAGAAGAAGGAAGAGAAGAAAGAAGAGA AAAAAGAGGAGGAGAAGAAAGAGGAGAAGAAGGAAGAAAAGAAGGAAGAAAATAAGGAAGAAAAGAAAGAGGAGGAGAAGAAGTAA
AA sequence Show only first row Show all	>Potri.015G144200.1 pacid=42775078 polypeptide=Potri.015G144200.1.p locus=Potri.015G144200 ID=Potri.015G144200.1.v4.1 annot-version=v4.1 MDPRTHIYLHVIHHRHHLTSSSPFVYRYKAHHKFFKHLDFSSLPLPSLLMAQQKVVLKVLTMTDDKTKKKAIEAAADIFGVDSIAVDLKDQKLTVIGLMD TVAVVKKLKKVGKVDIVSVGPAKEEKKEEKKEEKKEEEKKEEKKEEKKEENKEEKKEEEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23760			Copper transport protein famil...		Potri.015G144200 [exp]	0	1
AT1G40390			DNAse I-like superfamily prote...		Potri.003G046951 [exp]	5.91	0.6200
AT1G43760			DNAse I-like superfamily prote...		Potri.005G151275 [exp]	14.56	0.5863
					Potri.010G072501 [exp]	16.27	0.5863
AT5G57970			DNA glycosylase superfamily pr...		Potri.001G044402 [exp]	30.06	0.5702
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.006G176800 [exp]	54.11	0.5214
AT1G62420			Protein of unknown function (D...		Potri.011G023301 [exp]	57.18	0.5159
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	93.65	0.5033
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Potri.005G118500 [exp]	108.39	0.5038
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118101 [exp]	123.28	0.4828
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Potri.006G151600 [exp]	124.70	0.4808	ACO5

Compare expression of checked genes

Potri.015G144200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.