Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 659 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 644 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 547 / 0 DTA2 downstream target of AGL15 2 (.1.2) AT3G61270 545 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 541 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 496 / 3e-172 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 494 / 1e-171 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61290 476 / 1e-165 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 404 / 2e-136 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125000 [exp] 666 / 0 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 624 / 0 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.002G157900 [exp] 565 / 0 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 555 / 0 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 382 / 2e-128 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 104 / 8e-27 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039228 [exp] 637 / 0 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 577 / 0 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 538 / 0 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 500 / 1e-174 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10027473 [exp] 489 / 1e-170 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037863 [exp] 444 / 5e-152 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 449 / 7e-152 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 387 / 9e-130 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 382 / 4e-128 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 320 / 1e-105 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF05686 [poplar] [flax] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Potri.015G144400.3 pacid=42774767 polypeptide=Potri.015G144400.3.p locus=Potri.015G144400 ID=Potri.015G144400.3.v4.1 annot-version=v4.1 ATGAAGCAGAGGTTTTTAGAAAGTATGATCTGGCGGCCATTCATGAAGTTACCAGCTAGATCGTCTGTTGTCATCTTCCTCCTTCTCTTCCTCATCGTCG GCGCGTTGGTCTGCACGCGTCTCCTCGACTCCACTGTTACTGGGGGCAGCTCGGTCGTGAAAACATTTTTGACTGACAAAATCCCTAAAATAACCCGAAA CAAAACCGAGTACCCGGTCAATTGCACCGCATTCAACCCCACACGAAAATGCCCCCTGAATTACCCGACAAACACTCAAGAAGGTCCAGACCGTCCATCA GTCTCCACGTGTCCCGAGCACTTCCGATGGATCCACGAAGACTTACGTCCATGGGCCCACACGGGAATCTCAAGAGACATGGTAGAAAGGGCTAAAAGAA CAGCGAATTTTAGACTGGTGATTGTGAATGGCAAAGCATACATGGAAAGATATAGAAAGTCTTTTCAGACAAGAGATACTTTTACAGTGTGGGGAATCAT ACAGTTACTGAGGAAGTACCCCGGGAAATTGCCTGATTTGGATATGATGTTTGATTGTGTTGACTGGCCTGTTATTCGATCAAGCGATTATAGTGGGCCC AATGCCACGTCCCCACCTGCTTTGTTCCGGTATTGTGGTGATGATGACTCCCTCGATGTTGTTTTTCCTGATTGGTCCTTCTGGGGATGGCCAGAGATTA ATATAAAGCCATGGGAGTCTTTGTCGAATGACTTGAAAGAAGGAAACAAGATCACCAAATGGATGGAAAGGGAACCTTATGCTTATTGGAAAGGAAATCC ATCTGTGGCTGCAACAAGGCAAGACCTTATGAAATGCCATGCATCTGAAACACAAGACTGGAATGCTCGTGTCTATGCTCAGGACTGGATTAAAGAATCA CAGCAAGGATACCAGCAATCAAACTTGGCAAACCAATGCGTTCACAAGTATAAAATCTACATTGAAGGGTCTGCGTGGTCAGTCAGTGAAAAATACATTC TTGCCTGTGACTCTGTTACCTTACTGGTGAAACCCCATTATTATGATTTCTTCACAAGAAGTTTGGTGCCGAATCGGCACTACTGGCCTATTAAGGAGGA TGACAAGTGCAGATCCATTAAGTTTGCTGTTGAATGGGGCAACAACCATAGTGAAGAGGCACAGGCAATGGGAAAAGCGGCAAGTGAATTCATTCAAGAG GACTTGAAGATGGATTATGTCTATGACTACATGTTTCATCTCTTAAATGAGTATGCTAAACTCTTAACCTTCAAGCCTACTATACCTGGAAGAGCTATTG AACTATGTGCAGAAGCAATGGCTTGCCCAGCAAATGGTCTAGAGAAGAAGTTTATGATGGACTCCATGGTGATGAGTCCTGCAGACACAAGTCCATGCAC CATGCCTCCTCCCTATGACCCTCTATCTCTCCATTCCGTTTTTCAAAGAAATGGCAATTCGATAAAACAAGTCGAGTCTTGGGAGAAGGAATACTGGGAC AATCAAATTAAGCAGTCTTAG
AA sequence Show only first row Show all	>Potri.015G144400.3 pacid=42774767 polypeptide=Potri.015G144400.3.p locus=Potri.015G144400 ID=Potri.015G144400.3.v4.1 annot-version=v4.1 MKQRFLESMIWRPFMKLPARSSVVIFLLLFLIVGALVCTRLLDSTVTGGSSVVKTFLTDKIPKITRNKTEYPVNCTAFNPTRKCPLNYPTNTQEGPDRPS VSTCPEHFRWIHEDLRPWAHTGISRDMVERAKRTANFRLVIVNGKAYMERYRKSFQTRDTFTVWGIIQLLRKYPGKLPDLDMMFDCVDWPVIRSSDYSGP NATSPPALFRYCGDDDSLDVVFPDWSFWGWPEINIKPWESLSNDLKEGNKITKWMEREPYAYWKGNPSVAATRQDLMKCHASETQDWNARVYAQDWIKES QQGYQQSNLANQCVHKYKIYIEGSAWSVSEKYILACDSVTLLVKPHYYDFFTRSLVPNRHYWPIKEDDKCRSIKFAVEWGNNHSEEAQAMGKAASEFIQE DLKMDYVYDYMFHLLNEYAKLLTFKPTIPGRAIELCAEAMACPANGLEKKFMMDSMVMSPADTSPCTMPPPYDPLSLHSVFQRNGNSIKQVESWEKEYWD NQIKQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	0	1
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	2.23	0.8897
AT1G15410			aspartate-glutamate racemase f...		Potri.003G061800 [exp]	3.60	0.7915
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	6.92	0.8387
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	7.41	0.8061
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126201 [exp]	10.53	0.8243
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037900 [exp]	11.40	0.7676
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	13.56	0.7981
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G007600 [exp]	22.04	0.7782
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231850 [exp]	22.44	0.8042
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.007G016900 [exp]	22.71	0.7267

Compare expression of checked genes

Potri.015G144400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.