Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) AT4G36020 64 / 1e-11 CSDP1 cold shock domain protein 1 (.1) AT3G43590 56 / 1e-08 zinc knuckle (CCHC-type) family protein (.1) AT1G75560 50 / 7e-07 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT2G12880 45 / 5e-06 Zinc knuckle (CCHC-type) family protein (.1) AT5G20220 44 / 7e-05 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT2G17870 42 / 0.0003 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT5G36240 40 / 0.0008 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141700 [exp] 416 / 2e-148 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.016G063800 [exp] 71 / 3e-14 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1) Potri.004G193500 [exp] 65 / 1e-11 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 64 / 2e-11 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.005G234700 [exp] 54 / 2e-08 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.007G057100 [exp] 52 / 7e-08 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.005G112800 [exp] 51 / 1e-07 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.004G161800 [exp] 50 / 4e-07 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.010G092600 [exp] 47 / 8e-06 AT5G20220 429 / 5e-149 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039230 [exp] 299 / 5e-102 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10027475 [exp] 288 / 1e-97 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10008437 [exp] 57 / 7e-09 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10013378 [exp] 56 / 2e-08 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1) Lus10041902 [exp] 51 / 3e-07 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10036722 [exp] 50 / 8e-07 AT5G20220 322 / 3e-108 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Lus10028449 [exp] 49 / 2e-06 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10016232 [exp] 45 / 5e-05 AT3G43590 139 / 6e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10029311 [exp] 42 / 0.0002 AT3G43590 139 / 2e-37 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0511 [poplar] [flax] Retroviral_zf PF14392 [poplar] [flax] zf-CCHC_4 Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.015G144600.1 pacid=42774983 polypeptide=Potri.015G144600.1.p locus=Potri.015G144600 ID=Potri.015G144600.1.v4.1 annot-version=v4.1 ATGGTGAGCAAAAGGCAGAAACTAGCACGAAAGATATACAAAGAAGACCATCCAGAGTTGTTTCCAAAACCAGAACCAACACCACCTAACGACCCCAACA AGATGAAGAAGAAGAAGAAGAAGAGCTTGTTCAAGAGAAAAAATTCTGACCCAAAAGACCCAAATAAAGCAAATAAAAAAGGGTTTAGAAAACAACCTCT TAGAGTTCCTGGTATGAAGCCTGGTGATAGTTGTTTTATTTGCAAAGCTAAAGACCATATTGCCAAACTTTGCCCTCAAAAAGATGAATGGGAGAAGAAT AAGATATGTTTGCTTTGTCGGCATCGTGGGCATAGCCTGAAGCGTTGTCCTAAGAAGAACGATGAGACTATGGATCAGAAATTGTGTTACAATTGTGGGG AAACAGGGCACTCTCTTTCTCAATGTCCTCAGCCTCGAGAAGATGGGGGGACGAAGTTTGCCAATTGCTTTATCTGTAATGAACGTGGACATTTGAGCAA GGACTGTCCTAAAAATACTCGTGGCATATACCCAAAAGGTGGTTGCTGTAAACTATGTGGTGGTGTAACACATTTGGCTAGAGATTGTCCCGATAAGGGC AAGAGAGGTGACGCTGCCTTTGGCAGAGGAGCCATTGGAAGGGAAGTAAGGCCTACTGGGCGAGTGACTAAGTTTGTAAGTGGAGATGAGCTTGATGATG ATTTTATGACCGAAAACATGTATAGCATTCCAAAAGACAAGTCAACTGATTCAAAAGTTGTTCCTCCCGATTCGAAGGATGGTCATGTAAAATCAAAGAA GAAACAAGGTCCCAAAATAGTGAACTTTGTAGGATAG
AA sequence Show only first row Show all	>Potri.015G144600.1 pacid=42774983 polypeptide=Potri.015G144600.1.p locus=Potri.015G144600 ID=Potri.015G144600.1.v4.1 annot-version=v4.1 MVSKRQKLARKIYKEDHPELFPKPEPTPPNDPNKMKKKKKKSLFKRKNSDPKDPNKANKKGFRKQPLRVPGMKPGDSCFICKAKDHIAKLCPQKDEWEKN KICLLCRHRGHSLKRCPKKNDETMDQKLCYNCGETGHSLSQCPQPREDGGTKFANCFICNERGHLSKDCPKNTRGIYPKGGCCKLCGGVTHLARDCPDKG KRGDAAFGRGAIGREVRPTGRVTKFVSGDELDDDFMTENMYSIPKDKSTDSKVVPPDSKDGHVKSKKKQGPKIVNFVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Potri.015G144600 [exp]	0	1
AT1G75980			Single hybrid motif superfamil...		Potri.002G018100 [exp]	1.41	0.8220
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.003G182100 [exp]	3.16	0.8294
AT5G58210			hydroxyproline-rich glycoprote...		Potri.018G151900 [exp]	4.24	0.8195
AT3G10530			Transducin/WD40 repeat-like su...		Potri.010G232500 [exp]	5.29	0.8091
AT2G31410			unknown protein		Potri.014G145600 [exp]	5.83	0.7585
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	8.48	0.8033
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	10.95	0.8084
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Potri.018G029200 [exp]	12.04	0.7635
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.008G179201 [exp]	13.78	0.7952
AT1G23280			MAK16 protein-related (.1)		Potri.015G083700 [exp]	14.00	0.7452

Compare expression of checked genes

Potri.015G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.