Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48990 777 / 0 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 186 / 4e-52 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 173 / 2e-47 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT1G20480 167 / 4e-45 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 165 / 2e-44 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20510 163 / 6e-44 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G38120 163 / 9e-44 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 162 / 2e-43 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT4G19010 162 / 2e-43 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 159 / 3e-42 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105900 [exp] 788 / 0 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 184 / 2e-51 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 176 / 1e-48 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G169700 [exp] 175 / 3e-48 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.010G230200 [exp] 174 / 9e-48 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.018G094200 [exp] 171 / 1e-46 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.001G055700 [exp] 171 / 2e-46 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.017G138350 [exp] 171 / 2e-46 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.001G185500 [exp] 168 / 2e-45 AT3G16170 705 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039232 [exp] 801 / 0 AT3G48990 840 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10027478 [exp] 409 / 5e-141 AT3G48990 440 / 1e-153 AMP-dependent synthetase and ligase family protein (.1) Lus10027477 [exp] 342 / 1e-116 AT3G48990 355 / 2e-122 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 185 / 8e-52 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 178 / 2e-49 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 176 / 2e-48 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 172 / 5e-47 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 171 / 1e-46 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10026143 [exp] 171 / 1e-46 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10012280 [exp] 167 / 3e-44 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Potri.015G144700.1 pacid=42775891 polypeptide=Potri.015G144700.1.p locus=Potri.015G144700 ID=Potri.015G144700.1.v4.1 annot-version=v4.1 ATGGCCACTCTAACACTCACCGGGTTGTTAAAACGGGTCGCCGGAGAATTCCCTAACCGTCGAGCCGTCTCTGTTTCTGGCAAATTAGATTTAACTCACG CTCGTCTCCATGAAATCATCGAACGTGCCGCTTCTCGCCTTGTTGCCTCTGGAATTAAACCTGGAGATGTTGTTGCACTCACGTTTCCCAACACTGTTGA GTTTGTGATAATGTTTTTGGCCGTGATACGGGCCCGCGCCACGGCAGCGCCGTTAAATGCAGCCTACACCACGGAGGAGTTTGAGTTTTATTTATCAGAC TCGGAGTCCAAGCTATTATTAACCGCACAGGAAGGAAACAGTTCTGCTCAAGCCGCAGCTTCCAAGCTTAAAATCCCTCACGCCACCGCCACACTCAGCG GAGCAGATTCTGAACTCAATCTTTCCCCCAGTCCAACCGAGTCAGACGACCCCAATTTGATAAGCCAGCTCATTAACGACCCATCTGATATGGCTCTGTT TTTGCACACGTCAGGCACCACAAGCCGGCCCAAAGGGGTGCCACTGACTCAGCTCAATTTGGCTTCTTCGGTTAATAACATTAAATCGGTGTACAAACTC ACCGAATCAGACTCGACGGTGATAGTCTTGCCGTTGTTCCATGTTCACGGGTTGTTAGCCGGGTTATTGAGCTCGCTCGCGGCCGGAGCATCTGTGGCTT TACCATCTGCGGGCCGATTTTCGGCTTCAACATTTTGGAAAGACATGGACAAATACAACGCCACATGGTATACCGCTGTCCCTACTATACACCAAATAAT TTTGGATCGGCATTTTAGCAACCCAGAATCGGTTTACCCAAAGCTTCGGTTCATTAGGAGTTGTAGCGCCTCGCTTGCCCCGGCTATATTAGCTAGACTC GAGGAGGCATTCAATACGCCGGTCTTGGAGGCCTACGCGATGACGGAGGCGACCCATTTGATGTGTTCGAATCCATTACCGGAAGATGGGCCACATAAGG CGGGGTCGGTTGGCAAACCGGTCGGTCAAGAAATGGCTATATTGAACGAGAACGGGGTGATTCAAGATGCTAATGTTAGTGGCGAGGTGTGCCTTAGAGG TCCAAATGTGACAAAGGGCTACAAACACAATCCGGAGGCTAATAAGGTTGCCTTTCAATTCGGGTGGTTTCATACGGGTGATCTAGGTTATTTCGACTCG GATGGTTATTTGCATCTTGTGGGGAGGATTAAGGAGCTTATTAATCGTGGAGGGGAGAAAATATCACCAGTTGAAGTGGATGCAGTGCTTCTATCTCATC CTGACATTGCTCAAGCAGTTGCTTTCGGAGTTCCCGATGACAAATATGGCGAAGAGATAAATTGCGCCATAATTCCTAGAGATGGAACAGACATTGACGA GGAGGAGGTGCTGAGGTTTTGCAAGAAGAACCTAGCAGCGTTCAAGGTCCCAAAGAAGGTCTTCCTTACAGACTCCCTTCCAGAGACAGCCAGTGGGAAA ATCCAACGAAGGATTGTATCAGAACACTTCCTCGCTCAAATTTCAACTGCTAGTGTCCCCAAGTTTGGAGCCTAA
AA sequence Show only first row Show all	>Potri.015G144700.1 pacid=42775891 polypeptide=Potri.015G144700.1.p locus=Potri.015G144700 ID=Potri.015G144700.1.v4.1 annot-version=v4.1 MATLTLTGLLKRVAGEFPNRRAVSVSGKLDLTHARLHEIIERAASRLVASGIKPGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTTEEFEFYLSD SESKLLLTAQEGNSSAQAAASKLKIPHATATLSGADSELNLSPSPTESDDPNLISQLINDPSDMALFLHTSGTTSRPKGVPLTQLNLASSVNNIKSVYKL TESDSTVIVLPLFHVHGLLAGLLSSLAAGASVALPSAGRFSASTFWKDMDKYNATWYTAVPTIHQIILDRHFSNPESVYPKLRFIRSCSASLAPAILARL EEAFNTPVLEAYAMTEATHLMCSNPLPEDGPHKAGSVGKPVGQEMAILNENGVIQDANVSGEVCLRGPNVTKGYKHNPEANKVAFQFGWFHTGDLGYFDS DGYLHLVGRIKELINRGGEKISPVEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPRDGTDIDEEEVLRFCKKNLAAFKVPKKVFLTDSLPETASGK IQRRIVSEHFLAQISTASVPKFGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48990			AMP-dependent synthetase and l...		Potri.015G144700 [exp]	0	1
AT4G32190			Myosin heavy chain-related pro...		Potri.018G026300 [exp]	5.74	0.7446
AT5G58730			pfkB-like carbohydrate kinase ...		Potri.001G251500 [exp]	7.54	0.7739
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	9.59	0.7473
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	18.16	0.7140
AT1G55340			Protein of unknown function (D...		Potri.006G233100 [exp]	24.28	0.7407
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Potri.006G215700 [exp]	37.97	0.7032
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Potri.009G114900 [exp]	39.42	0.7321	CHB901,SWI3.4
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147500 [exp]	44.76	0.7072
AT5G56260			Ribonuclease E inhibitor RraA/...		Potri.011G169700 [exp]	68.86	0.6987
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	74.78	0.6715

Compare expression of checked genes

Potri.015G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.