Plant FIBer expression Database

Potri.015G144900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49000 442 / 4e-151 RNA polymerase III subunit RPC82 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012787
[exp]
543 / 0 AT3G49000 437 / 8e-149 RNA polymerase III subunit RPC82 family protein (.1)
Lus10033989
[exp]
481 / 3e-165 AT3G49000 364 / 1e-119 RNA polymerase III subunit RPC82 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF05645 RNA_pol_Rpc82 RNA polymerase III subunit RPC82
CL0123 HTH PF08221 HTH_9 RNA polymerase III subunit RPC82 helix-turn-helix domain
Representative CDS sequence
>Potri.015G144900.7 pacid=42774873 polypeptide=Potri.015G144900.7.p locus=Potri.015G144900 ID=Potri.015G144900.7.v4.1 annot-version=v4.1
ATGGTGTCTCAATACGGCATCAAGTATGCCGTTCACATCATCACCAATCACTTCGGTCCTCTCGTCGCCAAAGTATGCGACTGCCTTCTCAAGAAAGGAC
CGTTACCGCTCCGTGAAATAGTCCGTTACACTGAGCTATCTGAGACTCTCGTCAGAAACTGCTTGCTCGTCTTGATCCAGCATAACTGCCTTCAACCTTT
CCTCCTTGAAGAAGAAGGTGGATTTGGAGAAGTAAATAAAGTGAGTTCGCTGTACATGGTGCTATTCGATAATGTATTGCATCGCGTTAGGTTTTCCAAG
TTTATGGCTATTGTTTCGCAGGAATTCGATAAGCTGTGTGTAGATTTGATTGAAACATTGCTTCAACACGGGAGGCTTTCGTCAGAGCAAATTTTTGATG
GATTTAGGGACAGTACAGAAGGGAGTAGTAGTGGAGGTATGGAGGCTTTACAAGAAAATATGCATAAGCTTGTGATGGCACGATATGTTGAAAGGTGTCC
TATCTCAGAACCATTTCTTGCATTACCGAGTGAAGAAGAAGCTGCTCCTGTGAGGAGGCGAGGTGCTAAATCAGCCAAGGCATTTTTAGAGCCAGAAACC
CTAGAACAACGTGTTCTTGTAGCAGCAGTGCCTCCAGAAGGAATGAGATTTTCATTTGAATTAAATCCTGAGATAGGTGCCGACAGAGATAAAGTTGAGA
ATAACTCCTCTAGCAATATTGGAGATAAGCGCAAGCTTGATGCTTTGGAGTCCGATATTGATGGTGGGGTTGCGGACAAACAAGTAGCTCTTTGGCGTGT
CAATTTTGAGGAATTTATTCGCCGGCTTAGGCATAAGATTTGTATTGAGACTGTGAGAACACGGCTGGATGATGAAGCTGCCACTGTCTTCACTGCAATG
CTGGATGCATCAAGGAGTGAGGAAAAGAAAATAAAAACAGCAAGCTCAGTTCCTTTATCAGAAAATTCCATTTATGCAGAGGTGATTAAGAGCGAAAAGG
GCCGTAATATGACCTTAGATTATGTTATATCTGTCCTTGTCGGGTTGAGTTCTTCTCCACCATTTGTAAGGGTGGTTGACAATTCATACAGTATAGATTT
CAAACATACCATCGAAGTAGCTCAAACTGACGAGGTGGAGTCAATTGTGTATAAAAAATATGGCAAGGATGCTTATAGAATGTTCAGGTTACTTTCAAAG
GCTGGTTGCTTACTTGAGACTGATAAGATTTCAGATTCAATATTCCTTGAAAAGAAGGAAACAGCCAACATCCTTTCTAAGATGTGGCAGGGCGACTACT
TGCAGATGGAGAAATTAATCGCCGGACCAACACAATTCTTGTTGTGGAAAGTAAATATGATAAACCTAAGGGAACGCGTATTGGATGATATGTTCCATGC
GGCCTTAAACTTGAGTCTTCGAGTGGCATACGAGCTAGAACAACAAAAGGAGATTTTACATCTCGGAGTTGATGGGCCAATGAAAGAGAAGTATGAGAAA
CTTAAAAAAGTTAGATTTCTCCTGGAATCCTCAAGGATGAAGCTTGACGATGCTATAATGATTTTCCATGATTTCTAA
AA sequence
>Potri.015G144900.7 pacid=42774873 polypeptide=Potri.015G144900.7.p locus=Potri.015G144900 ID=Potri.015G144900.7.v4.1 annot-version=v4.1
MVSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQHNCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSK
FMAIVSQEFDKLCVDLIETLLQHGRLSSEQIFDGFRDSTEGSSSGGMEALQENMHKLVMARYVERCPISEPFLALPSEEEAAPVRRRGAKSAKAFLEPET
LEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSSNIGDKRKLDALESDIDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAATVFTAM
LDASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVGLSSSPPFVRVVDNSYSIDFKHTIEVAQTDEVESIVYKKYGKDAYRMFRLLSK
AGCLLETDKISDSIFLEKKETANILSKMWQGDYLQMEKLIAGPTQFLLWKVNMINLRERVLDDMFHAALNLSLRVAYELEQQKEILHLGVDGPMKEKYEK
LKKVRFLLESSRMKLDDAIMIFHDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G49000 RNA polymerase III subunit RPC... Potri.015G144900
[exp]
0 1
AT5G52545 unknown protein Potri.004G079400
[exp]
2.00 0.8797
AT1G66590 ATCOX19-1 A. THALIANA CYTOCHROME C OXIDA... Potri.001G187200
[exp]
2.82 0.8726
AT5G57280 RID2 root initiation defective 2, S... Potri.018G049800
[exp]
3.16 0.8675
AT1G48140 DPMS3 dolichol phosphate mannose syn... Potri.002G245800
[exp]
4.24 0.8728
AT3G18520 HDA15, ATHDA15 histone deacetylase 15 (.1.2) Potri.012G060400
[exp]
4.69 0.8339
Potri.018G126300
[exp]
4.89 0.8421
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Potri.014G143900
[exp]
7.34 0.8410
AT1G02960 unknown protein Potri.002G208058
[exp]
8.83 0.8286
AT3G01980 NAD(P)-binding Rossmann-fold s... Potri.017G067332
[exp]
14.07 0.8467
AT5G49890 ATCLC-C, CLC-C chloride channel C (.1) Potri.003G001500
[exp]
14.49 0.8286 CLC.3

Potri.015G144900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.