Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20850 1911 / 0 TPP2 tripeptidyl peptidase ii (.1) AT5G19660 49 / 4e-05 ATSBT6.1 ,ATS1P SITE-1 protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142200 [exp] 2322 / 0 AT4G20850 1936 / 0.0 tripeptidyl peptidase ii (.1) Potri.018G081400 [exp] 52 / 3e-06 AT5G19660 1570 / 0.0 SITE-1 protease (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039235 [exp] 2011 / 0 AT4G20850 1960 / 0.0 tripeptidyl peptidase ii (.1) Lus10027482 [exp] 2004 / 0 AT4G20850 1956 / 0.0 tripeptidyl peptidase ii (.1) Lus10011018 [exp] 47 / 9e-05 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family PF12580 [poplar] [flax] TPPII Tripeptidyl peptidase II
Representative CDS sequence Show only first row Show all	>Potri.015G145300.2 pacid=42775164 polypeptide=Potri.015G145300.2.p locus=Potri.015G145300 ID=Potri.015G145300.2.v4.1 annot-version=v4.1 ATGCCTGGGGATTCAATTACTGAAACATCTGGTGGTTATGGTGGTGGAGATGAGAACCGGCCTCTCAGGAATTTCAAGCTGAATGAATCAACTTTTTTGG CTTCCTTGATGCCTAAGAAAGAGATTGGTGCTGATCACTTCGTTGAAGCTCACCCTCAATATGATGGCCGTGGTGTCATCATTGCTATCTTTGATTCTGG AGTTGATCCGGCTGCCTCTGGATTACAAGTGACATCAGATGGGAAGCCGAAAGTGCTTGATGTTATTGATTGTACTGGGAGCGGAGATATTGATACTTCA AAAGTGGTGAAGGCTGATGCAGATGGTTGCATTCAAGGAGCTTCAGGTGCTTCTTTGGTTGTCAATTCTTCATGGAAGAATCCTTCTGGTGAATGGCATG TGGGTTACAAGTTTTTGTATGAGCTACTCACTGACACACTGACTTCTCGTTTGAAGAAAGAGAGGAAAAAGAAGTGGGACAAGAAAAACCAAGAAGAAAT CGCCAAGGCTGTAAAGCATCTGGACGAATTCAACGAGAAACACTCCAATCCAGAGGAAGCAGACTTGAAAAGGGTTCGTGAAGACCTCCAAGCCAGAATT GATTTGCTACGGAAACAGGCTGATAGCTATGATGACAAGGGGCCTGTCATAGATGCTGTTGTATGGCATGATGGAGATCTGTGGAGGGCTGCTCTTGACA CACAGAGTGTTGAGGATGACTCAGATTGTGGACAGCTAGCTAACTTCGTACCGCTTACAAATTATAGGATTGAAAGGAAGCATGGAGTGTTCAGCAAGTT AGATGCCTGTGCATTTGTTCTTAATGTTTATAGTGACGGAAACATCTTAAGTATTGTAACGGATTGCTCGCCTCATGGAACTCATGTTGCTGGTATTGCT GCAGCCTTCCACCCGAAGGAGCCGTTATTGAATGGAATTGCACCCGGGGCCCAGTTGATATCTTGCAAAATTGGCGACACACGTTTAGGTTCAATGGAGA CAGGCACTGGCTTGATCCGGGCCCTAATAGCTGCTGTGGAGCATAAATGTGATCTCATCAACATGAGTTATGGGGAACCAACGTTACTGCCAGATTATGG CCGCTTCGTTGACCTTGTTAATGAAGTGGTGAACAAGCACCGTCTTATATTTGTAAGTAGTGCTGGCAATGGTGGTCCAGCATTAAGTACTGTTGGTGCT CCTGGTGGCACAACTTCAAGCATTATAGGTGTTGGTGCATATGTCTCTCCTTCCATGGCTGCAGGTGCTCATTCTGTGGTTGAGCCTCCTTCTGAAGGAC TTGAATACACATGGTCAAGCCGAGGACCAACTTCTGATGGAGATCTTGGGGTCAGTATTAGTGCTCCTGGAGGGGCTGTTGCTCCTGTCCCTACCTGGAC TCTTCAAAAACGCATGCTTATGAATGGAACATCAATGGCATCTCCATCTGCTTGTGGTGGAGTTGCATTACTTATTAGTGCAATGAAGGCTGAGGGTATT CCTGTAAGTCCATACAGTGTAAGGAAGGCCCTTGAGAATACATCCGGTCCTGTAGGTGAATTGCCAGCAGATAAACTATCCACTGGACAGGGGCTTATGC AAGTTGACAGAGCCCACGAATATATAAGGCAGTCTCGGAATATTCCATGTATTTGCTATGAAATAATGGTCAATCAATCTGGAAAATCAACTCCTACTTC ACGAGGCATCTACCTGAGGGAGGCTAGTGCTTGCCAACAACCTACAGAGTGGACGGTGCAAGTCCAACCAAAGTTTCATGAAGGTGCAAGTAACTTGGAA GAATTGGTTCCCTTCGAGGAATGCATTGAGTTACACTCTACTGAAAAAGTTGTTGTGAGGGCTCCTGAGTATCTCCTTCTCACTAACAATGGGCGTAGCT TCAACATAGTGGTTAATCCCACCAAGCTAAGTGAAGGTCTACATTATTATGAAGTATACGGGGTTGATTGCAAAGCACCATGGCGTGGTCCCATTTTCAG GATCCCAGTCACCATAACAAAGCCTATGACAGTGAAGAATCACCCTCCATTCATTTCATTTTCTAGGATGTCATTTCTACCAGGGCACATAGAAAGGAGA TATATTGAAGTGCCATTTGGTGCTACTTGGGTTGAGGCAACTATGAAAACATCAGGGTTTGATACTACTCGACGATTTTTTGTCGACACTGTTCAGATTT GTCCCTTACAAAGACCTATGAAGTGGGAGAGTGTTGTAACATTTTCTTCTCCTACTGCCAAAAGTTTTGCATTTCCTGTTGTGGGTGGTCAGACAATGGA ATTAGCTGTTGCTCAGTTTTGGTCAAGTGGGATAGGAAGTCATGAAACCACCATTGTAGACTTTGAGATTTTGTTTCATGGGATTGCCATCAATAAAGAG GAAATCATTCTTGATGGAAGTGAAGCACCTATAAGAATTGATGCTGAAGCTCTATTGTCATCTGAGAATCTCGTCCCTGCTGCTACTCTGAATAAGATAA GAGTTCCATATCGACCCGTCGATGCTAAACTTGGTACTCTTACAGAGAATCGCGACAAACTACCCTCTGGAAAACAGACACTGGCACTGACATTAACTTA CAAGTTTAAATTGGAAGATGGAGCTGAAGTGAAACCTCAAGTTCCATTGCTTAACAATCGCATATATGACACAAAATTTGAATCACAATTTTATATGGTT TCTGACACTAACAAGCGTGTATATGCCATGGGTGATGTCTATCCTAGTGCTACAAAACTTCCCAAGGGTGAATACAATTTACGCCTATATCTACGGCATG ACAATATGCAATATTTGGAAAAGATGAAGCAGTTGCTATTGTTTATTGAGAGGAATTTGGATGACAAGGATGTCATTCGATTGAACTTTTTCTCTGAACC TGATGGTCCTGTGATGGGAGATGGTGCTTTTAAGTCCTCAGTTTTAGTTCCAGGGAAGAAAGAAGCAATTTACTTGGGCCCACCAGTGAAAGACAAGCTC CCGAAGAATGCTCCACAAGGATCTGTACTGCTTGGAGCAATCTCATATGGAAAGCTATCACTTGCTGGCCAGGAAGGGGAGGAAAGTTCACAAAAGAACC CTGTATCTTACCAAATCTCTTATGTAGTGCCACCAAATAAGGTTGATGAGGACAAGGGAAAAAGTTCTTCAACTAGCCTGAAAACTGTGTCTGAGCGTTT AGAAGAAGAGGTTCGAGATGCAAAGATAAGAGTTCTTTCAAGCCTAAAACAAGACACTGATGAAGAACGCTCGGAATGGAAAAAGCTATCCACTTCTCTT AAGTCTGATTACCCAAACTACACTCCACTACTTGCTAAGATTTTGGAAGGCTTGCTTTCACAGAGTAAGGTGGAAGATAAAATTCATCATCATGAAGATG TTATGGATGCAGCAGATGAGGTAATTGATAGTATTGACAAAGATGAGTTGGCAAAGTTCTTTTCACTCAAGAGTGATCCAGAAGATGAGGAGACAGAGAA AAAGAAAAAGGCAATGGAGACGACCAGGGATGAATTGGCCGAGGCACTGTACCAAAAAGGGTTGGCATTGGTGGAGAATGAATCTCTAAAGGTAAGGAAA GCTGAAACAGAAGGCACAAAAGATTTGTTCGAGGACAATTTCAAAGGGCTGCAAAAATGGGTTGATGCAAAGTCCTCTAAATATGGCACCCTCTTAGTGC TACGTGAAAGACGACGTGGGAGGCTAGGAGCAGCACTAAAGGCATTGAATGAAATGATGCAAGATAATGGAGATCCACCCAAGAAGAAGCTGTATGAACT GAAGCTCTCGTTGCTTGATGAGATTGGATGGAAACATTTATCAACATATGAGAAAGAGTGGATGCTCGTGCGGTTCCCACCAAGCTTGCCTCTTTTTTAA
AA sequence Show only first row Show all	>Potri.015G145300.2 pacid=42775164 polypeptide=Potri.015G145300.2.p locus=Potri.015G145300 ID=Potri.015G145300.2.v4.1 annot-version=v4.1 MPGDSITETSGGYGGGDENRPLRNFKLNESTFLASLMPKKEIGADHFVEAHPQYDGRGVIIAIFDSGVDPAASGLQVTSDGKPKVLDVIDCTGSGDIDTS KVVKADADGCIQGASGASLVVNSSWKNPSGEWHVGYKFLYELLTDTLTSRLKKERKKKWDKKNQEEIAKAVKHLDEFNEKHSNPEEADLKRVREDLQARI DLLRKQADSYDDKGPVIDAVVWHDGDLWRAALDTQSVEDDSDCGQLANFVPLTNYRIERKHGVFSKLDACAFVLNVYSDGNILSIVTDCSPHGTHVAGIA AAFHPKEPLLNGIAPGAQLISCKIGDTRLGSMETGTGLIRALIAAVEHKCDLINMSYGEPTLLPDYGRFVDLVNEVVNKHRLIFVSSAGNGGPALSTVGA PGGTTSSIIGVGAYVSPSMAAGAHSVVEPPSEGLEYTWSSRGPTSDGDLGVSISAPGGAVAPVPTWTLQKRMLMNGTSMASPSACGGVALLISAMKAEGI PVSPYSVRKALENTSGPVGELPADKLSTGQGLMQVDRAHEYIRQSRNIPCICYEIMVNQSGKSTPTSRGIYLREASACQQPTEWTVQVQPKFHEGASNLE ELVPFEECIELHSTEKVVVRAPEYLLLTNNGRSFNIVVNPTKLSEGLHYYEVYGVDCKAPWRGPIFRIPVTITKPMTVKNHPPFISFSRMSFLPGHIERR YIEVPFGATWVEATMKTSGFDTTRRFFVDTVQICPLQRPMKWESVVTFSSPTAKSFAFPVVGGQTMELAVAQFWSSGIGSHETTIVDFEILFHGIAINKE EIILDGSEAPIRIDAEALLSSENLVPAATLNKIRVPYRPVDAKLGTLTENRDKLPSGKQTLALTLTYKFKLEDGAEVKPQVPLLNNRIYDTKFESQFYMV SDTNKRVYAMGDVYPSATKLPKGEYNLRLYLRHDNMQYLEKMKQLLLFIERNLDDKDVIRLNFFSEPDGPVMGDGAFKSSVLVPGKKEAIYLGPPVKDKL PKNAPQGSVLLGAISYGKLSLAGQEGEESSQKNPVSYQISYVVPPNKVDEDKGKSSSTSLKTVSERLEEEVRDAKIRVLSSLKQDTDEERSEWKKLSTSL KSDYPNYTPLLAKILEGLLSQSKVEDKIHHHEDVMDAADEVIDSIDKDELAKFFSLKSDPEDEETEKKKKAMETTRDELAEALYQKGLALVENESLKVRK AETEGTKDLFEDNFKGLQKWVDAKSSKYGTLLVLRERRRGRLGAALKALNEMMQDNGDPPKKKLYELKLSLLDEIGWKHLSTYEKEWMLVRFPPSLPLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Potri.015G145300 [exp]	0	1
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.018G046800 [exp]	22.80	0.6025
AT1G02290			unknown protein		Potri.014G109600 [exp]	63.07	0.5630
AT3G62930			Thioredoxin superfamily protei...		Potri.002G209000 [exp]	70.99	0.5371
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.008G161700 [exp]	88.79	0.4957
AT1G02010		SEC1A	secretory 1A (.1.2)		Potri.014G069300 [exp]	111.18	0.5348	Pt-SEC1.1
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Potri.006G039300 [exp]	111.94	0.4408
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.016G052700 [exp]	221.67	0.4383

Compare expression of checked genes

Potri.015G145300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.