Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23870 509 / 1e-180 Pectinacetylesterase family protein (.1.2.3) AT5G26670 404 / 2e-139 Pectinacetylesterase family protein (.1.2) AT1G57590 404 / 3e-139 Pectinacetylesterase family protein (.1) AT2G46930 402 / 8e-139 Pectinacetylesterase family protein (.1) AT3G62060 392 / 5e-135 Pectinacetylesterase family protein (.1) AT3G05910 389 / 1e-133 Pectinacetylesterase family protein (.1.2) AT3G09410 383 / 3e-131 Pectinacetylesterase family protein (.1.3) AT4G19420 374 / 4e-128 Pectinacetylesterase family protein (.1.2) AT3G09405 348 / 2e-117 Pectinacetylesterase family protein (.1) AT4G19410 337 / 2e-113 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142300 [exp] 627 / 0 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.013G000900 [exp] 400 / 5e-138 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 399 / 1e-137 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 395 / 8e-136 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.014G110900 [exp] 396 / 1e-135 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.010G004400 [exp] 394 / 1e-135 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 366 / 2e-124 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 343 / 6e-116 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 329 / 3e-110 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039238 [exp] 503 / 5e-179 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10007200 [exp] 397 / 1e-136 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 388 / 2e-133 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 388 / 4e-133 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10024398 [exp] 358 / 2e-121 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3) Lus10034767 [exp] 346 / 6e-117 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 345 / 2e-116 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 343 / 2e-115 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 341 / 6e-115 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 343 / 3e-114 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.015G145400.1 pacid=42775975 polypeptide=Potri.015G145400.1.p locus=Potri.015G145400 ID=Potri.015G145400.1.v4.1 annot-version=v4.1 ATGGATTTAGCAGTAGCCATTTTACTGGTATTGTTGAATTTGGCATCATGGTGCACTTGCTCAGATAGCCGGCTTCTTGTTAAGATGACCCTGGTTCCCA ATGCTTCCAAAATTGGTGGCTTTTGCTTGGATGGAAGTTTGCCAGCGTATCACTTGCACAGAGGATTCGGTGCTGGTGCACGCAACTGGCTTCTGCAATT TGAGGGAGGTGGATGGTGCAATGATATCCTATCATGCTTGGAGAGAGCCCAAACGCGGCGGGGATCTACCCTTTACATGAACAAGTTGGAGGATTTCAAT GGAATCCTAAGCAACAATGCCTCTCTTAATCCAGATTTTTACAATTGGAACCGTGTGAAGCTTAGATATTGTGATGGAGGCTCGTTTTCTGGAGATGCCA AGTTCGACAATGGGACATCAGTCCTTTACTTTAGAGGGAAAAAGATTTGGGAAGCAATCATTCTTGATCTTCTCCCCAAAGGCTTGATGCATGCACGCAA GGCTTTGCTTTCAGGTTGCTCTGCTGGGGGTTTATCATCCTTTCTCCATTGCGAAAACTTTGCCAGGATATTACCGAGGAATACCAGTGTGAAATGCTTG AGTGATGCCGGTTTTTTCATGGACGAAAGAGACGTCACTTTGAACCACACAATGAGGAACTTCTTTGAAAACCTTGTTTCTCTACAGGGGATTGAAGAGA ATCTCAATAAGAACTGCACTAGTTTCCTCAACAACCCAAAACTGTGCATGTTTCCGCAGTATTTCTTGAAATACATCACAACACCATTCTTCATCTTGAA CACAGCCTATGATGTTTACCAATTCCATCATGCATTGGTTCCACCTTCCGCTGACACGAGAGGACACTGGAACCGTTGCAAGCTTAACATAGCATCATGT AACACACGACAGCTTGACATATTGCAAGATTTCAGGCAAGACATGCTGGTGGCGTTGCTATCATCTCGCATATATTCTAGAAGAGGGGGAATGTTTATAA ATTCATGCTTTGCTCATTGCCAAAGTGAGTCACAAGACACATGGTTTGCGCTAGACTCCCCGCAAATACACAGTAAGACCATTGCAGAAGCCGTTGGCGA CTGGTATTTTAGTAGAAATACAAGCAAGTTAATTGACTGTGCATATCCTTGCGGCACCTCCTGCCATAACATTGTAGCATAG
AA sequence Show only first row Show all	>Potri.015G145400.1 pacid=42775975 polypeptide=Potri.015G145400.1.p locus=Potri.015G145400 ID=Potri.015G145400.1.v4.1 annot-version=v4.1 MDLAVAILLVLLNLASWCTCSDSRLLVKMTLVPNASKIGGFCLDGSLPAYHLHRGFGAGARNWLLQFEGGGWCNDILSCLERAQTRRGSTLYMNKLEDFN GILSNNASLNPDFYNWNRVKLRYCDGGSFSGDAKFDNGTSVLYFRGKKIWEAIILDLLPKGLMHARKALLSGCSAGGLSSFLHCENFARILPRNTSVKCL SDAGFFMDERDVTLNHTMRNFFENLVSLQGIEENLNKNCTSFLNNPKLCMFPQYFLKYITTPFFILNTAYDVYQFHHALVPPSADTRGHWNRCKLNIASC NTRQLDILQDFRQDMLVALLSSRIYSRRGGMFINSCFAHCQSESQDTWFALDSPQIHSKTIAEAVGDWYFSRNTSKLIDCAYPCGTSCHNIVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23870			Pectinacetylesterase family pr...		Potri.015G145400 [exp]	0	1
AT3G09410			Pectinacetylesterase family pr...		Potri.006G084900 [exp]	8.18	0.8534
AT4G19420			Pectinacetylesterase family pr...		Potri.004G234100 [exp]	14.83	0.8172
AT1G67180			zinc finger (C3HC4-type RING f...		Potri.004G106000 [exp]	48.83	0.8215
AT1G20540			Transducin/WD40 repeat-like su...		Potri.002G011200 [exp]	49.29	0.8243
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.005G239900 [exp]	66.24	0.8174
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	66.61	0.8199
AT4G33220		PME44, ATPME44	A. THALIANA PECTIN METHYLESTER...		Potri.006G134500 [exp]	71.15	0.7997
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.001G261000 [exp]	102.82	0.7835
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	106.23	0.7823
AT5G50860			Protein kinase superfamily pro...		Potri.015G103300 [exp]	150.64	0.7511

Compare expression of checked genes

Potri.015G145400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.