Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23890 710 / 0 unknown protein AT5G52410 567 / 0 unknown protein AT3G25680 209 / 6e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142500 [exp] 1363 / 0 AT5G23890 650 / 0.0 unknown protein Potri.010G131000 [exp] 219 / 2e-61 AT3G25680 502 / 2e-173 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014972 [exp] 826 / 0 AT5G23890 700 / 0.0 unknown protein Lus10038854 [exp] 823 / 0 AT5G52410 709 / 0.0 unknown protein Lus10035054 [exp] 216 / 7e-60 AT3G25680 472 / 2e-161 unknown protein Lus10021714 [exp] 212 / 7e-58 AT3G25680 456 / 1e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G145700.2 pacid=42774849 polypeptide=Potri.015G145700.2.p locus=Potri.015G145700 ID=Potri.015G145700.2.v4.1 annot-version=v4.1 ATGGTATCATCCATGGCTGCCACCTGTTCTCCAACCTCTCTACAGCTTCGGTTAGCCATGAATTGCCATAACCGTCGAATATCGCCTCCAACACAAACAC GGCCTTGGATGAGGAACAAGGAGGTAGGTAGTGGTAGCTTTCGCTTCCTCTTCCTGCCTCAAAATGAACGGCGTTTTGATGGAGGTTCGTGGATTGGGTC GAGTTCTGCTGCGGATAATTTTGCTGGATGGTCTGATTCGGATCATGATAGTGATCAGTCTATTGAGAATCAGAGAAAGAAATGGCTTAAAGGGATTGTG GGAGCTGGAGTAGCCGGGGTCATTCTATTTGCAGGGCTTACCTTTGCAGCATTGTCTTTAAGCAAGTGGAGCATTTCCAGGCCAAAACAACATATGGAAC CATTCACAACTCAGCAGGAAGTTTCATTGGCCTCTGACAAGGAGGATGATAAAGTTGAGGAGAGTAAAAGTGAGGACAGAAATGATAGTGATCTGGAAAG CAAGACAGATATACAAACAGATCTTTCATCATTTCCAGAACTTAATGAAGCACCCAATGAAAATGTACTTGGTGACAGCACTGAGACCTCGACTGTAGAC AATGTTGATTATGCTACTAGGGTCAGTGGTACCGGTAATAATGATTCTTTTCAAGAAGATTTACAATATGAATCAAGTTTTGATGACAAGTCTGTTGCTC CTGAAATGACTCCCAGCTCAGAGAATTTGCCCAGTTCTGAAATTAATGCAAGTTCCCCTGTATCAACTTTTGAAGTAGATAAAAATCCTGTTAATGTCGA ACCTAGCAATGTGCCAGATATAACAAATCTTAACACGGACCTCCAGAGTGAATTGCCTGTCTCGAAGATAAATGAGAATTCTGATCCTTCATCAGATTCT TTTACTTCCACTGTTCTTGAACCCAAAGAGCCTATGGGTGTGAATATTTCAGACAGTTCACCCATGGATACAAGTTCAGAACCTCAAATTGTTCCTGAAG ATGATACGGAAGCTGTAGCCTCGCTTTTAACCAAAGAAAATCTTGATCTGAGCAATACAACACAGAACTCAGCTGAGAGAAATAGTTCTTCCCTGGAAGT GAATTACTTAGATGAAAGTGATTTCTCAGGAACAGTGTCTGATTTTGCAAACCAGGCCATAATTGCTAATAATGAGATGAAGGAAAGCGAACCATTTTTT GAACTGCCAACTCCTGAAATTTCTTTCTCCTCTGCTGGTATACCTGCTCCATCTGCAGTTTCTGCAGCCTTGCAGGTGCTTCCTGGAAAGGTTCTAGTTC CAGCAGTTGTTGATCAGCTTCAGGGACAGACATTTGCTGCATTGCAAGTTTTGAAGGTTATTGAGGCTGATGTTCAACCTAGTGATCTATGTACACGCCG TGAATATGCTCGCTGGTTAGTTGCTGCTAGCAGTGTTCTTTCAAGGAGCACGGTGTCAAAAGTATATCCTGCAATGTACATAGAGAATGTTACTGAACTC GCGTTTGATGATATCACACCTGATGACCCTGATTTTTCATCCATTCAAGGCTTAGCTGAAGCAGGATTTATCTCAAGCAAGCTTTCGAATCATGATTTGC TTTCTTCTTCAGTTGAAAACCAAGGTCCATTTTACTTTGCTGCTGAAAGCCCTTTATCACGCCAGGACCTTGTAAGTTGGAAGATGGCCCTAGATAAAAG ACAACTTCCAGAAGCAGATAAAAAGATGCTATACAAGCTTTCTGGGTTTAGAGATATTGACAAGATAAACCCAGATGCATGGCCTGCACTTGTGGCTGAC TTGTCTGCAGGAGATCAAGGAATTATATCACTTGCATTCGGTTGCACGAGATTGTTCCAGCCTGATAAACCTGTCACAAAGGCCCAAGCTGCTGTTGCTC TTGCAACTGGTGAGGCTTCTGACACAGTTAGTGAAGAGCTTGCACGCATTGAAGCAGAATCTGTGGCAGAAAATGCTGTTTCTGCCCACAATGCTTTAGT AGCTCAAGCTGAACAGGATATAAATGCAAGTTTTGAGAAGGAGCTTTCCATGGAGAGGGAAAAGATTAATGCTGTAGAGAAAATGGCTGAAGAGGCAAGG TGCGAATTAGAAAGGTTAAGAGCTGAGAGGGAGAAGGATGGTGTTGCCTTGATGAAGGAACGCATTGCTATTGAATCTGAAATGGAAGTTCTTTCAAAGT TAAGGCGTGAAGTGGAGGAGCAGTTGCAAAGCCTTTTGAGCAACAAGTTGGAGATATCATATGAAAAAGAAAGGATTAGCAAGCTTCAAAAGGAAGCTGA GAGTGAAAAGCAGGAGATCTCTAGATTACAGTATGACCTAGAGGTTGAGCGGAAAGCCTTATCTATGGCCAGGGCTTGGGCTGAAGACGAGGCAAAAAGA GCAAGAGAGCAGGCAAAAGCCCTTGAAGAGGCTAGATATCGGTGGGAGAAGCATGGCATCAAGGTGGTTGTTGACAGCAGTCTTGATGAAGAGAGTTCTA CTGGAGTTACATGGCTGACTGCTGGAAAACAAGTCTCTTCTGTTGAAGGAACTGTTAACAGGGCTGAGAACTTGGTGGACAAGCTCAAGCTAATGGCAGA TAACGTTAAAGGGAAGTCTCGAGAAGTAATTGATAAAATCATACAGAAGGTACAGGTCTTAATCTCAATTCTGAGAGAGTGGGTTGCCAAGGCATATGCA CAGACCAAAGAACTTAAAGAAGCCACCATCTCAAAGACACGGGGATCAATACAAGAGTTGCAGCAGAACACAACTGAATTTAGTTTTGCCATCAAGGAGA AGGCAAGAGGATCAATGCAAGAGTTGCGGCAACATACTGCAGATTTTAGTTTGGCTGTCAAGGAAAGCACAAAGCGGGTGGCAGAAGATTGCAGGGAGGG AGTGGAGAAACTCACACAGAAGTTCAAATCGTGA
AA sequence Show only first row Show all	>Potri.015G145700.2 pacid=42774849 polypeptide=Potri.015G145700.2.p locus=Potri.015G145700 ID=Potri.015G145700.2.v4.1 annot-version=v4.1 MVSSMAATCSPTSLQLRLAMNCHNRRISPPTQTRPWMRNKEVGSGSFRFLFLPQNERRFDGGSWIGSSSAADNFAGWSDSDHDSDQSIENQRKKWLKGIV GAGVAGVILFAGLTFAALSLSKWSISRPKQHMEPFTTQQEVSLASDKEDDKVEESKSEDRNDSDLESKTDIQTDLSSFPELNEAPNENVLGDSTETSTVD NVDYATRVSGTGNNDSFQEDLQYESSFDDKSVAPEMTPSSENLPSSEINASSPVSTFEVDKNPVNVEPSNVPDITNLNTDLQSELPVSKINENSDPSSDS FTSTVLEPKEPMGVNISDSSPMDTSSEPQIVPEDDTEAVASLLTKENLDLSNTTQNSAERNSSSLEVNYLDESDFSGTVSDFANQAIIANNEMKESEPFF ELPTPEISFSSAGIPAPSAVSAALQVLPGKVLVPAVVDQLQGQTFAALQVLKVIEADVQPSDLCTRREYARWLVAASSVLSRSTVSKVYPAMYIENVTEL AFDDITPDDPDFSSIQGLAEAGFISSKLSNHDLLSSSVENQGPFYFAAESPLSRQDLVSWKMALDKRQLPEADKKMLYKLSGFRDIDKINPDAWPALVAD LSAGDQGIISLAFGCTRLFQPDKPVTKAQAAVALATGEASDTVSEELARIEAESVAENAVSAHNALVAQAEQDINASFEKELSMEREKINAVEKMAEEAR CELERLRAEREKDGVALMKERIAIESEMEVLSKLRREVEEQLQSLLSNKLEISYEKERISKLQKEAESEKQEISRLQYDLEVERKALSMARAWAEDEAKR AREQAKALEEARYRWEKHGIKVVVDSSLDEESSTGVTWLTAGKQVSSVEGTVNRAENLVDKLKLMADNVKGKSREVIDKIIQKVQVLISILREWVAKAYA QTKELKEATISKTRGSIQELQQNTTEFSFAIKEKARGSMQELRQHTADFSLAVKESTKRVAEDCREGVEKLTQKFKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23890			unknown protein		Potri.015G145700 [exp]	0	1
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	5.19	0.8768
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	24.39	0.8110
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	32.68	0.8060
AT5G14370			CCT motif family protein (.1)		Potri.001G339200 [exp]	33.22	0.7967
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	39.98	0.7699
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.008G114900 [exp]	50.19	0.7811
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	55.31	0.7457
AT1G71240			Plant protein of unknown funct...		Potri.001G210200 [exp]	56.24	0.7952
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Potri.018G128300 [exp]	58.01	0.7366	ARP6.1,ARP906
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.008G135200 [exp]	59.70	0.7824	Pt-FKF1.2

Compare expression of checked genes

Potri.015G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.