Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49050 632 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 540 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G37710 467 / 4e-163 alpha/beta-Hydrolases superfamily protein (.1) AT2G42450 73 / 1e-13 alpha/beta-Hydrolases superfamily protein (.1) AT3G14075 69 / 2e-12 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT4G16070 63 / 2e-10 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT1G56630 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1) AT1G05790 44 / 0.0002 lipase class 3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142700 [exp] 768 / 0 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 630 / 0 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 620 / 0 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G086900 [exp] 498 / 8e-175 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 494 / 1e-173 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 74 / 8e-14 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 69 / 3e-12 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G211200 [exp] 63 / 2e-10 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 62 / 3e-10 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027485 [exp] 581 / 0 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039240 [exp] 580 / 0 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 577 / 0 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 506 / 5e-179 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 304 / 4e-101 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10010983 [exp] 303 / 7e-101 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 154 / 7e-45 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10005809 [exp] 95 / 8e-23 AT5G37710 144 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10013158 [exp] 78 / 6e-15 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 78 / 6e-15 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3) CL0028 [poplar] [flax] AB_hydrolase PF03893 [poplar] [flax] Lipase3_N Lipase 3 N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.015G145900.3 pacid=42776083 polypeptide=Potri.015G145900.3.p locus=Potri.015G145900 ID=Potri.015G145900.3.v4.1 annot-version=v4.1 ATGTCAATCTTATGTGGCGGACCTCTGCATGAGGGTGTGTGTTGTCTAGCTTGTGCTCGCTGGGCGTGGAAACGATGTCTCCACACTGCAGGTCAGGACA GTGAAACTTGGGGTCTTGCAACTGCTGAAGAATTTGAGCCGGTTCCTCGCCTTTGCCGCTATATACTAGCTGTTTATGAAGATGATCCTCAACACCCTCT CTGGGAACCTCCTGGAGGGTACGGAATAAACCCAGATTGGTTAATCCTAAGAAGAACTTATGAAGATAATCATGGAAGGGCGCCACCATATATACTGTAT CTTGATCATGACCATGCTGATATAGTTCTAGCCATTAAGGGCCTTAAGTTTTCAAAGGAGAGTGACTATGCTGTACTTTTGGATAATAAGCTAGGGAAAA GGAAAATTGATGGTGGGTACGTCCACAATGGGCTATTGAAGGCTGCTGGTTGGTTTTTGGATGTGGAGGGTGACATTTTGAAGGAATTAGTGGAGAAGTA TCCGAATTACACACTGACTTTTACAGGTCATTCTCTAGGGTCTGGTGTAGCAGCAATGCTGACACTATTGGTAGTGCTACATCGTGATAAATTGGGAAAC ATTGACAGAAGGAGGATCAGATGCTACGCGGTTGCACCTGCAAGATGTATGTCACTTAATTTGGCTGTCAGATATGCAGATGTTATCAATTCTGTAGTGC TTCAGGATGATTTCTTACCGCGGATAGCCACGCCTTTGGAAGACATTTTCAAGTATCTTTTCTGTTTGCCCTGCCTACTATGTTTGAGGTGCATGAGGGA TACATGTTTACTGGATGAGAAAGTGATCAAAGACCCAAGGAGACTGTATGCACCTGGTCGCCTCTATCACATTGTTGAAAGAAAGACTTACAGATTGGGA AGATTCCCCCCAGTTGTGAGGACAGCAGTGCCAGTAGATGGGCGTTTTGAGCATATAGTTTTTTCTTGTAATGCTACTTCTGATCATTCAATCATTTGGA TAGAAAGAGAAGCCCAGAGGGCTATGGATGTAATGGTAGAGAAAGATGATATCATGGAGATCCCAGCAAAGCAAAGGATGGAACGACAGGAGACTTTGGC CCGAGAACATAGAGAGGAGTACAGGGCTGCGCTACAAAGAGCTGTTACGCTCCCAGTTCCCCATGCCTATTCATCTTCCAAGTATGGAACTTTCAATGAG ATGGCGGATTCGCACAGATGGAGTGGGGAATCTTCTTTTGGCTCTTCGAAGACAAGAGAGAACTGGGATGAATTGATTGAACGCCTTTTTGACAAAGATG AATCTGGTCACATGGTTCTCAAGAAATCAAAAAGGGATGATTGA
AA sequence Show only first row Show all	>Potri.015G145900.3 pacid=42776083 polypeptide=Potri.015G145900.3.p locus=Potri.015G145900 ID=Potri.015G145900.3.v4.1 annot-version=v4.1 MSILCGGPLHEGVCCLACARWAWKRCLHTAGQDSETWGLATAEEFEPVPRLCRYILAVYEDDPQHPLWEPPGGYGINPDWLILRRTYEDNHGRAPPYILY LDHDHADIVLAIKGLKFSKESDYAVLLDNKLGKRKIDGGYVHNGLLKAAGWFLDVEGDILKELVEKYPNYTLTFTGHSLGSGVAAMLTLLVVLHRDKLGN IDRRRIRCYAVAPARCMSLNLAVRYADVINSVVLQDDFLPRIATPLEDIFKYLFCLPCLLCLRCMRDTCLLDEKVIKDPRRLYAPGRLYHIVERKTYRLG RFPPVVRTAVPVDGRFEHIVFSCNATSDHSIIWIEREAQRAMDVMVEKDDIMEIPAKQRMERQETLAREHREEYRAALQRAVTLPVPHAYSSSKYGTFNE MADSHRWSGESSFGSSKTRENWDELIERLFDKDESGHMVLKKSKRDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.015G145900 [exp]	0	1
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	5.74	0.8298
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426430 [exp]	10.00	0.8057
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	11.66	0.7881
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.006G279100 [exp]	13.85	0.7436
AT5G37480			unknown protein		Potri.013G065200 [exp]	13.96	0.6955
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.017G126300 [exp]	16.24	0.8231
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	24.18	0.7775
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	25.39	0.8015
AT1G34380			5'-3' exonuclease family prote...		Potri.013G114400 [exp]	26.87	0.7493
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030700 [exp]	29.79	0.7296

Compare expression of checked genes

Potri.015G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.