Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23910 439 / 1e-144 ATP binding microtubule motor family protein (.1) AT5G02370 209 / 3e-58 ATP binding microtubule motor family protein (.1) AT2G22610 136 / 1e-32 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 126 / 1e-29 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27950 122 / 8e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 121 / 4e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 120 / 8e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G54870 119 / 2e-27 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT1G55550 115 / 2e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G73860 114 / 6e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085300 [exp] 224 / 8e-64 AT5G02370 660 / 0.0 ATP binding microtubule motor family protein (.1) Potri.013G033900 [exp] 141 / 7e-35 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G455300 [exp] 127 / 8e-30 AT5G65930 1881 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.013G020700 [exp] 125 / 2e-29 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G146700 [exp] 120 / 8e-28 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.002G110600 [exp] 119 / 2e-27 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.005G030271 [exp] 118 / 3e-27 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G161100 [exp] 117 / 7e-27 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 117 / 1e-26 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039243 [exp] 409 / 1e-131 AT5G23910 396 / 3e-127 ATP binding microtubule motor family protein (.1) Lus10027488 [exp] 400 / 4e-128 AT5G23910 327 / 9e-101 ATP binding microtubule motor family protein (.1) Lus10024395 [exp] 221 / 6e-63 AT5G02370 593 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025349 [exp] 174 / 2e-45 AT5G02370 536 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025275 [exp] 128 / 4e-30 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 125 / 2e-29 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035954 [exp] 125 / 3e-29 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10033849 [exp] 122 / 6e-29 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025708 [exp] 124 / 9e-29 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 117 / 7e-27 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0198 [poplar] [flax] HHH PF12836 [poplar] [flax] HHH_3 Helix-hairpin-helix motif
Representative CDS sequence Show only first row Show all	>Potri.015G146000.1 pacid=42776591 polypeptide=Potri.015G146000.1.p locus=Potri.015G146000 ID=Potri.015G146000.1.v4.1 annot-version=v4.1 ATGAGTGGCGTACCAAGAAAGCAAAACCTCAACCCCAAGGTTCGCGTCATTGCCAAAATCAGAGGTTCCTCACATCTTGACGGTCTTTCAACTTCTTGGA TTTCCGTTCACAATAACATACGTGACGGCATTTTTTCTCACTCTCTCACTTTTTCTCTTGGAGACCGACCAGTTGCTACCAGTGGTGGTGGTGGTAGGAA GGAGGCTTATGTGGTGGATTATTGCTACGAACAAAACGAGAAAAATGATTTGGTTTTTGAAAGAGAAGTTAAGCCTTTTATTAATGAAGTTTTTGATGGC CGTAATGCCACGATTATTGCTTGTGGAGCAAGGGGCACTGGAAAATCCTACCTCTTTCAGGGTACGGATGATGAACCGGGTCTGACAGTGTTGGCTGTGG ATGAAATGCTTCGATTGGCTGCGGATAACGGGAAGTCCATTGCCGTTTCCTTTTATGAGGTTGATCAAGATCATCATGTCAAAGACTTGTTGGATCCCAA TCGACAACAAGTTTTTGTATTGAAGGATGCTCATGGAAAAACACAATTAAAAGGACTTTCTCAGGTTTCGGTGACATCCGTGTCTCAATTTCACAATTTC TATGGTGGTGGGACTAATCCACGTAAATCGATTCAGAAAGCAGTGACTGAACTTCCCAAGAGAAGTCATAAAGGGTTGATAGTATATGTATCGTCTCATG GTGGAGAAAAGTTGGACGTTTCTGTCAGCAAATTGAATTTTGTTGACTTGGCAGGTTATCAGGATGCTAGAAGGAAGAGTATTGATGGACATAATTTGGT TGAGAGTACAAGGAATATTAATAAGTCCATTCATGCCATTCATAATGTTGTTTACTCTTTGAAAGCTAATGAAACTCATGTGCCATACCGGGAAAGTAAG ATCACTACCATGTTGCAAGATTCACTAGGAGGGGCTGGCAGAATTTTGATGGTCACTTGCTTAAACCCATCTTTTTGCCAAGAATCTATTTACATGGTGA AATTAGCATCTCGTTCTTGTCAAGGAAGTAGTTGGGCTATCACAGACTCCACAAAGAAAGCCAACAGCTCAGCAAGACCAATGGTGCCTTCTTCACATAA TAGCCGGATGCTTGGTAGTGTTTCCACATCTGTGAAGAAACAAATTGTGTCTCGAGGGCACATTTCTGGAAAAAAAGCACACTGTTCAACTTCCACACTG AAAGCTAGGAAACTGTTTGATGAGTCAAGTGATTTGATATCTCAGAAGATTACTGTGCAGCCAAGTTCCTCAAACAATGTTCCAACAGTTGAATCTGTTA TGCATGAAGCGGACCAGCTCACTTCAAATGTTGCCAAAGAAGCATCATCTTTGGAAGTAGAAGGTGTATCATTGTTCACTCATGAGGATTCAAACTCTGT TTCTGTGGATGTTTCTCCTGTAGCAGCAATTTCTAGTACTTGTGAAACTACAATACTTGATAAGGAAGTTTCTCCTGTAGCAGCAGTTTCTAGTACTTGT GAAACTACAATAATTGATAAGGAAGTTTCTCCTGTAGCAGCAGTTTCTGTTACTTGTGAAGCTACAATACTTGATAAGGAAGCTTCTCCACTAGCTATTT CCAGTACTTGTGAAATTACCGTACTTGATAAGGCTGACGAGGACCAAAACAAAACTGTGCTTTACACTGGAGAGTTATCTATGTTCAATGAAGGTAAAAA AATAGACAAGGAAAACAACAGTTCAATTGTCAATCAAGGTGGATCGCCACCCATTAGCGCACAATTGCAAGAACTATCAAACAGTTTGAAGTTACTATGT TCCTCAACCCCATCGTGCATGGATATAACACTAAAAAATGATGCATTTCACAATCAAACTTCAACTGATATCGGGGAACCAACAACTCCCAGTTCAAGTA TGAGAGTAACAAATAGGGAAATTACAAGCTTTTGTAGTCCATGGGAAAAATTCAACGCCCGCAGCACTGGGATGAAGAACTCACTTGTTCAAGATTATCT TAGATTGTTGAACACAGCTGACAAGGAAGAATTGAGGAAATTGAAGGGTATTGGAGAAAAGAGAGCTACTTCCATCCTTGAACTTCGAGAAGATTGTCCA GAGCCATTTAAGAATCTTGATGATTTGAAAGACATCGGACTCTCAGCCAAGCAGGTAAAAGGATGGCTTAAAAAGGAAGTTGGGGGACTCTTTGATTAG
AA sequence Show only first row Show all	>Potri.015G146000.1 pacid=42776591 polypeptide=Potri.015G146000.1.p locus=Potri.015G146000 ID=Potri.015G146000.1.v4.1 annot-version=v4.1 MSGVPRKQNLNPKVRVIAKIRGSSHLDGLSTSWISVHNNIRDGIFSHSLTFSLGDRPVATSGGGGRKEAYVVDYCYEQNEKNDLVFEREVKPFINEVFDG RNATIIACGARGTGKSYLFQGTDDEPGLTVLAVDEMLRLAADNGKSIAVSFYEVDQDHHVKDLLDPNRQQVFVLKDAHGKTQLKGLSQVSVTSVSQFHNF YGGGTNPRKSIQKAVTELPKRSHKGLIVYVSSHGGEKLDVSVSKLNFVDLAGYQDARRKSIDGHNLVESTRNINKSIHAIHNVVYSLKANETHVPYRESK ITTMLQDSLGGAGRILMVTCLNPSFCQESIYMVKLASRSCQGSSWAITDSTKKANSSARPMVPSSHNSRMLGSVSTSVKKQIVSRGHISGKKAHCSTSTL KARKLFDESSDLISQKITVQPSSSNNVPTVESVMHEADQLTSNVAKEASSLEVEGVSLFTHEDSNSVSVDVSPVAAISSTCETTILDKEVSPVAAVSSTC ETTIIDKEVSPVAAVSVTCEATILDKEASPLAISSTCEITVLDKADEDQNKTVLYTGELSMFNEGKKIDKENNSSIVNQGGSPPISAQLQELSNSLKLLC SSTPSCMDITLKNDAFHNQTSTDIGEPTTPSSSMRVTNREITSFCSPWEKFNARSTGMKNSLVQDYLRLLNTADKEELRKLKGIGEKRATSILELREDCP EPFKNLDDLKDIGLSAKQVKGWLKKEVGGLFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23910			ATP binding microtubule motor ...		Potri.015G146000 [exp]	0	1
AT2G37960			unknown protein		Potri.016G109100 [exp]	3.46	0.6939
AT4G15890			binding (.1)		Potri.010G013300 [exp]	3.46	0.7388
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.010G010480 [exp]	7.14	0.6746
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	7.74	0.7031	CHR932
AT3G01516			unknown protein		Potri.001G349700 [exp]	9.16	0.6773
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.015G131400 [exp]	16.21	0.7485
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Potri.002G232600 [exp]	16.94	0.6905
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	20.34	0.6703	POL.2
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.014G024200 [exp]	25.80	0.5883
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Potri.005G067100 [exp]	26.98	0.6536

Compare expression of checked genes

Potri.015G146000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.