Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49055 191 / 2e-54 unknown protein AT1G24560 108 / 9e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183800 [exp] 104 / 2e-23 AT1G24560 691 / 0.0 unknown protein Potri.010G049400 [exp] 97 / 7e-21 AT1G24560 642 / 0.0 unknown protein Potri.008G184600 [exp] 92 / 2e-20 AT1G24560 302 / 2e-97 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027489 [exp] 279 / 1e-87 AT3G49055 244 / 3e-75 unknown protein Lus10025844 [exp] 107 / 3e-24 AT1G24560 750 / 0.0 unknown protein Lus10038257 [exp] 107 / 5e-24 AT1G24560 736 / 0.0 unknown protein Lus10039244 [exp] 93 / 5e-22 AT3G49055 89 / 2e-21 unknown protein Lus10013022 [exp] 84 / 1e-16 AT1G24560 624 / 0.0 unknown protein Lus10029143 [exp] 81 / 8e-16 AT1G24560 613 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G146100.1 pacid=42775081 polypeptide=Potri.015G146100.1.p locus=Potri.015G146100 ID=Potri.015G146100.1.v4.1 annot-version=v4.1 ATGGAAACCACCTCACAAAACCCTCCTCAGCCCTACATCAATGACCTTGCTGATTCCCCAACCAATGCCAACATCATTATCTCTGACCACCATGATCTCC TCTCTCAGCTTCAATCTCTCCAACACTCTTTTGATACCATTCAAGGAAAATCCTCCTTGATGGAGGAAAACCTACTCCTCCTCCAGCAACAAAGAGATGA TGCGCTCGATAACAACTCCCAGCTCAAATTAGCTATCCAAAAAGTTTCCCACGAGAGAGACTCTCTTCGTGACCAAGTTAGAGAACTCGAGGCCTCTTTC AAGGAAAAAGAAGATGGGTTTGTTAAAAGGATTGATGAGGCATATCTGACAATGGAAAAACTAGAAAAAGAAATGGAATTTCTTAGAGAGAGGAATGACA AGCTGGAGCTTGAGATAAAAGAGGCTAGGGACAAGAATGGGTTCTTGTTGAAGATCAATATGGATTTAGTAAGGCCTGTGAAGGAATCTCTGGTGAAATT AACAGAGTGTGTACATGATGGAAATTTAATTGAGAGATCTGATACTGAAGAGAACAGGGAAGAATTGGATCTAGATGATGAATTGAGGTCGGTTTGGGAG GAATTCAAGGCAATTACAAGGCTGGCAAGTGAGGCGGAATCAAAAGTAAATGAGTTCAACGAGATGAAGAAGAAGGAAATAAGGGAATTGGAGAGTAGTG TGGTGAGTTTGACAGAGGAGAATCGAGACATCAATAGCTTGTTAAGGGTTGCTTTGGTGGAGAAGGAGGCTGTGGAGAGGAGTTTGAATAAGATAAAAGG GAACAACGAGCAGAAGAGGGTGGCTTTGTTGCAGTTTGCAGAACGCGGGTTGCAGAGAGTAGGATTTGGTTTCATGATGGGAAGTGGGAGTAATGAACAA TCCATGGAAAGTTCAGGAGCTGGTAGCAATACCACTAATGCTTCTGCTGCTGCAAGTACTAAATCAGATGGCAGTGAATGTGAAGAGGAGGTTGTTAGTC TGGCCTCAACTATGGAGAGAATAATGAAGAATTTACGGCTCGAAAACAGTCAACTAAGGAGATCTCTGGAAGAATCTAGGTCAGATGCTGAGCGATTACA AAGCCTTGTGCAAAAACAAGATAAAGAAATTGCAGAGAACATACTGTACATAAAAGAGTTGGAAGATAGAGAGAGGGTGCAAGCTCAAAATGTTGAGGAA CTCCTGACAGAAATAAAAGAAACTGAGGCAGAGGTTGTGAGATGGAGAGAAGCTTGCGAGCTGGAAGTGGAAGCTGCGAAAAAAGCAATCGAAGAACGCG AAAAATTGGTTGTTATCTTGAAACAAGAACTGGAGAAAACAAAGGCTAATTTAGAGATATCAAATGGCAAGTTAAAGCTGAAAGATGAACTAGCAGTTGC TGCAATGGCTGCCCAGGCAGCAGCAGAGAGGTCTCTGCAGCTAGCTGATAGCAGGGCCGCAGGACTTCGTCAGCGAATTGAGGAGCTAACAAGGCAAGTA GAAGAAGCAGAGAGCAAAGAGCGGAGATGCAATAAGGTCAGGCATATATGTTGGCCATGGCGGGCCATCAAAGCGGCCACAGCTAGCACTGCAAATAATA GAGTTCAGAATGCGAGACGACGAATGCTGCCAGAAATGCAAGCCTTGCTTCATCACAATGTCTGA
AA sequence Show only first row Show all	>Potri.015G146100.1 pacid=42775081 polypeptide=Potri.015G146100.1.p locus=Potri.015G146100 ID=Potri.015G146100.1.v4.1 annot-version=v4.1 METTSQNPPQPYINDLADSPTNANIIISDHHDLLSQLQSLQHSFDTIQGKSSLMEENLLLLQQQRDDALDNNSQLKLAIQKVSHERDSLRDQVRELEASF KEKEDGFVKRIDEAYLTMEKLEKEMEFLRERNDKLELEIKEARDKNGFLLKINMDLVRPVKESLVKLTECVHDGNLIERSDTEENREELDLDDELRSVWE EFKAITRLASEAESKVNEFNEMKKKEIRELESSVVSLTEENRDINSLLRVALVEKEAVERSLNKIKGNNEQKRVALLQFAERGLQRVGFGFMMGSGSNEQ SMESSGAGSNTTNASAAASTKSDGSECEEEVVSLASTMERIMKNLRLENSQLRRSLEESRSDAERLQSLVQKQDKEIAENILYIKELEDRERVQAQNVEE LLTEIKETEAEVVRWREACELEVEAAKKAIEEREKLVVILKQELEKTKANLEISNGKLKLKDELAVAAMAAQAAAERSLQLADSRAAGLRQRIEELTRQV EEAESKERRCNKVRHICWPWRAIKAATASTANNRVQNARRRMLPEMQALLHHNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49055			unknown protein		Potri.015G146100 [exp]	0	1
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	1.41	0.9296
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.006G227600 [exp]	2.44	0.9191
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	4.47	0.9225
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	4.47	0.9132
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	4.58	0.8961
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.001G168700 [exp]	7.21	0.8628
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	8.00	0.8960
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	8.00	0.8861	GL2.2
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144200 [exp]	8.48	0.8845
AT5G53500			Transducin/WD40 repeat-like su...		Potri.002G174100 [exp]	10.19	0.8912

Compare expression of checked genes

Potri.015G146100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.