Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25610 385 / 1e-125 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G143200 [exp] 1044 / 0 AT4G25610 400 / 2e-131 C2H2-like zinc finger protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027491 [exp] 545 / 0 AT4G25610 446 / 2e-149 C2H2-like zinc finger protein (.1.2) Lus10039246 [exp] 513 / 5e-174 AT4G25610 425 / 4e-141 C2H2-like zinc finger protein (.1.2) Lus10014974 [exp] 455 / 9e-153 AT4G25610 426 / 6e-143 C2H2-like zinc finger protein (.1.2) Lus10038856 [exp] 431 / 2e-143 AT4G25610 392 / 4e-130 C2H2-like zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G146300.3 pacid=42775096 polypeptide=Potri.015G146300.3.p locus=Potri.015G146300 ID=Potri.015G146300.3.v4.1 annot-version=v4.1 ATGCCAGTTGTGACACCTGTGAACAGTATTACTGATGTGATGAGACCAGAGGAGGGGAATGATTCTTCTCTGGATACATTCATCAGGGATGCCATTGGGA GACAGCCTCTTCTTTCTTTTTCGAGGCCAAATGATAAGCCTGTTCAGTGGATCCAATTACTCAATGCTCTCGATCAGCCAGACTACCCAGGTTGGCCTTT GCTCACTCCTTTGAAGGTGCAGATGCAAAAATGCAGCAAGTGTTCCCGAGAATTTTGTTCTTCCATTAACTATAGAAGACACTTGCGTGTTCACCATAGG TTAAAAAGACTTGATAAGGATTCTGGCAAAAACAGGGACATGTTAGGAGCATTTTGGGATAAGCTTTCTGAGGATGAGGCAAAGGAAATATTATCATTCA AGGATGTGACTTTGGAGGAAGTTCCAGGGTCTTCGATTATAAAGTCATTGACGACAGTTATTCGGAAACCAGTGATTTCTTCGCTTACTCAATCTTGTTG GAGAGCTGGTTCTGCCCTTTTGGATCTTGTCCAAGGGAGGCCCTCCAGGTGTCCTTTGTCTTCTGGACGGCTATTCAGTATTCTTGATGATGCAAGTGAA AAAACGTTTCTGTGCGGAACAGCTGTATTAATACAAAAATATATTTTTGATGGCGGGGCTGGGAAGATTGGGCTTGAAACAAAGAATATAGTTGCTTGCA CAAGCTTTGTGGTGGAACAGAAATTGATTAAAGCATGGCTTGCAGACAAGGATGCAGAAGCTTTGAGGTGCCAAAAGTTGCTCGTGGAGGAGGAGGAAGC CGCCCAAAGAAGGCTGGCTGAACTCTTGGAAAGGAAGAGGCAGAAAAAACTGAGGCACAAAGAACAGAAAGCGAAGGAGCAAAGGCAAGACGAGAAGGTC GATGTTAAGGAGTGTATTGATGACACTCTGGAGGCTGTGCCTCAAGCTGAACAATCTTGCCCCTTGGCTATATCTGATTCTGATACGCTTGGTTCAGAGA CCCTGCCAGATGATGTCCCCTCATCTCTTGAACCCTTACTACTACCAAGAACAGATGAAGATGTTGATTTGGAAAATCAGATAGTGCATGGTGGTGAACG GTCAAAGTTACAAGGAAATAGTCATAGGCATATGGTTGTTACTCGATGGCATGCTCCTTCAAGATCACAACGGAATAGTCTGTCAAATGTTTTCCATGCA AGTCAAAATTCTCAAGCTCCAAAACCTGGCGCCATGGAGAAGCATGGAATTCAAAGGGATTTTAAGCCTGGGCCCATGGTCAATGGCAATAGAAAGTGGA GCCAAAAACCTAAACCAGAATATTATGGGGAGTGTCTTAAAGCTAGAGTAAAAAAGGAAGTAATAACTGAACCAGAGCATGAGAAGAAGGGGGAGGTTCT GATTGGCTCTATATCTGTCACTCTTGGAAATTGTAGCCATGATGAAAGTAACAACTTGGATGGAGCCCAGGATGATTGCCTTGTAGAGCATGAAATTTCA AAGAAGAAAAATGTGCAGGAGAAGCACAACAGACCTGATTCTGTTCAATGTGGCATGAATCGGCCAACAGTAAAGCTTTGGAGGCCTGTTAGTCGAAATG GAACAAAAGGTCTAATACTAGTTGAGAATGGCAATAGAAAATGCCAACCCGATGGCATTGATGGTAAGGTTGAGGATCAGATCTTGTTCAATAACAGCTC TCTAAGATCATGTGCCATGGATGATAGCTTTGGTGGGATGGAGAATGGTTCTCCACTGGGGGATCTTAACCGAGGAGGCTTGCAGTTCTCAAGCCATGAA GCAAAGGCTTTTCTTGCAGAGAGGTGGAAGCGGGCCATTGCTGCTGAACATGTGAAATTGGCTCTATCCCCAGACTATCAAGTTGCTGCAAATCATTCAT TGGATATTAGAAAGCAAGACGTCATTGGCAGTGCAGAAAATCAGTTGGTTGATGTGGAGGCACAAGAGTCATCAACTGCTGGAGCTGCTAAAGCCAAGTG TAAAACAAAGCCTGATAAGGGTGTCAAGTTAAAGTATATACCTAAACAAAGATCCATCACTTAA
AA sequence Show only first row Show all	>Potri.015G146300.3 pacid=42775096 polypeptide=Potri.015G146300.3.p locus=Potri.015G146300 ID=Potri.015G146300.3.v4.1 annot-version=v4.1 MPVVTPVNSITDVMRPEEGNDSSLDTFIRDAIGRQPLLSFSRPNDKPVQWIQLLNALDQPDYPGWPLLTPLKVQMQKCSKCSREFCSSINYRRHLRVHHR LKRLDKDSGKNRDMLGAFWDKLSEDEAKEILSFKDVTLEEVPGSSIIKSLTTVIRKPVISSLTQSCWRAGSALLDLVQGRPSRCPLSSGRLFSILDDASE KTFLCGTAVLIQKYIFDGGAGKIGLETKNIVACTSFVVEQKLIKAWLADKDAEALRCQKLLVEEEEAAQRRLAELLERKRQKKLRHKEQKAKEQRQDEKV DVKECIDDTLEAVPQAEQSCPLAISDSDTLGSETLPDDVPSSLEPLLLPRTDEDVDLENQIVHGGERSKLQGNSHRHMVVTRWHAPSRSQRNSLSNVFHA SQNSQAPKPGAMEKHGIQRDFKPGPMVNGNRKWSQKPKPEYYGECLKARVKKEVITEPEHEKKGEVLIGSISVTLGNCSHDESNNLDGAQDDCLVEHEIS KKKNVQEKHNRPDSVQCGMNRPTVKLWRPVSRNGTKGLILVENGNRKCQPDGIDGKVEDQILFNNSSLRSCAMDDSFGGMENGSPLGDLNRGGLQFSSHE AKAFLAERWKRAIAAEHVKLALSPDYQVAANHSLDIRKQDVIGSAENQLVDVEAQESSTAGAAKAKCKTKPDKGVKLKYIPKQRSIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G146300 [exp]	0	1
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.005G076300 [exp]	2.00	0.7422
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.001G269700 [exp]	2.44	0.7266	Pt-GR1.2
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	7.14	0.7651
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	7.93	0.7369
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	9.16	0.7289	CHR919
AT3G22430			unknown protein		Potri.009G147201 [exp]	12.12	0.6697
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	29.46	0.6543
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	30.85	0.6936
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	35.49	0.6403
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	39.16	0.6953

Compare expression of checked genes

Potri.015G146300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.