Plant FIBer expression Database

Potri.015G146900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02260 646 / 0 Divalent ion symporter (.1)
AT4G25760 41 / 0.0003 ATGDU2 glutamine dumper 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G141600
[exp]
619 / 0 AT1G02260 569 / 0.0 Divalent ion symporter (.1)
Potri.012G144000
[exp]
603 / 0 AT1G02260 582 / 0.0 Divalent ion symporter (.1)
Potri.017G141800
[exp]
575 / 0 AT1G02260 538 / 0.0 Divalent ion symporter (.1)
Potri.017G141950
[exp]
244 / 2e-77 AT1G02260 263 / 2e-85 Divalent ion symporter (.1)
Potri.017G141700
[exp]
133 / 3e-37 AT1G02260 140 / 7e-41 Divalent ion symporter (.1)
Potri.017G141650
[exp]
72 / 1e-15 AT1G02260 64 / 5e-14 Divalent ion symporter (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027497
[exp]
681 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
Lus10039251
[exp]
675 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF02040 ArsB Arsenical pump membrane protein
Representative CDS sequence
>Potri.015G146900.5 pacid=42775851 polypeptide=Potri.015G146900.5.p locus=Potri.015G146900 ID=Potri.015G146900.5.v4.1 annot-version=v4.1
ATGGCTATGGCTCCTACAGTGAAAGTAGTTCTAGGCTTAATTGCTTTTGCAATTTTCTGGGTACTGGCAGTTTTCCCTTCTATCCCTTTTCTACCAGTTG
GAAGAACTGCAGGTTCCCTCCTGGGAGCTATGCTGATGGTTGTGTTTCGAGTCCTAACCCCAGATCAAGCATTTGCTGCAATTGATCTGCCAATCCTTGG
TCTTCTCTTTGGGACAATGGTTGTCAGTGTTTATCTTGAGAGAGCAGATATGTTCAAATACTTAGGTAAGTTGCTCTCCTGGAAAAGCAAGGGAGCCAAG
GACCTGCTTTGTCGAATTTCTGTGATTTCTGCCATTTCAAGTGCTCTTTTCACTAACGACACCTCTTGTGTGGTTTTGACTGAATTTATATTGAAAATTA
CAAGGCAACATAATCTCCCACCTCATCCTTTCCTACTTGCCCTTGCCTCAAGTGCAAATATTGGGTCTTCTGCCACTCCAATTGGCAATCCTCAAAACCT
GGTTATAGCTGTTCAGAGTAAGATTGCTTTTGGGAGTTTTGTTTTCGGAATTCTACCGGCTATGCTCGTGGGAGTTGTTGTGAATATTCTGATCCTTATG
TGCATGTACTGGAAGTTGTTATCTTCTGCTCAGAAGGATGAAGAAGATGCAACTGCAGAGGTTGTTGCAGATGGCGATGTCATTTCTCATCGTTTTTCAC
CTGCCACCATGTCACATCTTACATCTTTAAATTCTCTAGAATGGAATTCTAGACTAGAATCAGTGAACATGCAAAGTTCTCCCAATATGAGTGGTCAAGT
AAACCATGCTGAGACTCTTAGAAACCGAATAAATTCAACTGAGAACGAAATCCACAGTGACTCTTCTAGTGTATACGAGTCTGCAAGAAATTCGAGTGCA
TCAAAAGAGATAACAAATGATGCTTCTTCCCAGAAAAGAGACGAAACTGTCTCTTCAAGGAGGATAGAGTCAATGGATAGATCGAGAGATTTATCATCAA
TGCAGTTTTCATCAGGAGACTTTGCCACAAAATGGAAAAGGATGCTGTGGAAATCATGTGTTTACCTTGTTACCATAGGCATGTTGATTGCATTTTTTTT
GGGTCTGAATATGTCATGGACTGCACTTACTGCTGCTCTTGCTCTTGTGGTTCTTGATTTCAAGGATGCTCAACCATGCTTTGAGAAGGTCTCGTATTCC
CTTTTAATTTTCTTTTGTGGAATGTTTATCACGGTTGATGGCCTTAACAAAACTGGAATTCCAAGTGCTCTGTGGGACTTCATGGAGCCTTATGCACGCA
TAGATCATACTGCTGGAATAGTAATTCTTGCCCTTGTCATACTTGTGCTGTCAAATTTTGCTTCAAATGTACCAACTGTTCTCTTGCTTGGAGGACGGGT
AGCAGCCTCAGCAGCTGCAATTTCAGCTGCTGATGAGAAGAAGGCCTGGCTCATCTTAGCTTGGGTGAGCACAGTATCTGGGAACCTTTCACTATTGGGA
TCAGCTGCCAACTTGATAGTCTGTGAGCAAGCTCATCGCGCCCCACACTTTGGTTACAGCTTATCTTTTTGGAAGCACCTTAAATTCGGAGTTCCATCTA
CTATTATTATTACTGCCATTGGTTTAATACTTATTAGATGA
AA sequence
>Potri.015G146900.5 pacid=42775851 polypeptide=Potri.015G146900.5.p locus=Potri.015G146900 ID=Potri.015G146900.5.v4.1 annot-version=v4.1
MAMAPTVKVVLGLIAFAIFWVLAVFPSIPFLPVGRTAGSLLGAMLMVVFRVLTPDQAFAAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLSWKSKGAK
DLLCRISVISAISSALFTNDTSCVVLTEFILKITRQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSKIAFGSFVFGILPAMLVGVVVNILILM
CMYWKLLSSAQKDEEDATAEVVADGDVISHRFSPATMSHLTSLNSLEWNSRLESVNMQSSPNMSGQVNHAETLRNRINSTENEIHSDSSSVYESARNSSA
SKEITNDASSQKRDETVSSRRIESMDRSRDLSSMQFSSGDFATKWKRMLWKSCVYLVTIGMLIAFFLGLNMSWTALTAALALVVLDFKDAQPCFEKVSYS
LLIFFCGMFITVDGLNKTGIPSALWDFMEPYARIDHTAGIVILALVILVLSNFASNVPTVLLLGGRVAASAAAISAADEKKAWLILAWVSTVSGNLSLLG
SAANLIVCEQAHRAPHFGYSLSFWKHLKFGVPSTIIITAIGLILIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02260 Divalent ion symporter (.1) Potri.015G146900
[exp]
0 1
AT2G41540 GPDHC1 6-phosphogluconate dehydrogena... Potri.016G043400
[exp]
1.00 0.7932
AT4G00290 Mechanosensitive ion channel p... Potri.002G162100
[exp]
6.32 0.7574
AT1G07985 Expressed protein (.1) Potri.001G266500
[exp]
9.16 0.7377
AT5G17600 RING/U-box superfamily protein... Potri.006G144200
[exp]
9.16 0.7824
AT4G34260 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alph... Potri.009G093500
[exp]
16.24 0.7219
AT5G13190 AtGILP GSH-induced LITAF domain prote... Potri.001G061900
[exp]
18.43 0.7467
AT2G35790 unknown protein Potri.008G042800
[exp]
19.97 0.7791
AT2G41810 Protein of unknown function, D... Potri.016G056100
[exp]
32.61 0.6829
AT2G05760 Xanthine/uracil permease famil... Potri.014G157800
[exp]
34.52 0.7259
AT2G21120 Protein of unknown function (D... Potri.019G001100
[exp]
65.29 0.7008

Potri.015G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.