Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56760 420 / 4e-149 SAT-52, AtSerat1;1, SAT5 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) AT3G13110 325 / 1e-110 SAT-M, SAT-A, SAT3, SAT-1, AtSerat2;2 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) AT1G55920 322 / 2e-110 SAT5, SAT1, AtSerat2;1 SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 1, serine acetyltransferase 2;1 (.1) AT4G35640 249 / 3e-81 ATSERAT3;2 serine acetyltransferase 3;2 (.1) AT2G17640 235 / 3e-76 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109500 [exp] 464 / 7e-167 AT5G56760 419 / 1e-148 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.001G365500 [exp] 333 / 3e-114 AT3G13110 402 / 3e-140 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Potri.005G099700 [exp] 116 / 3e-31 AT4G35640 280 / 2e-94 serine acetyltransferase 3;2 (.1) Potri.011G068001 [exp] 107 / 2e-28 AT2G17640 134 / 6e-39 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032686 [exp] 432 / 3e-154 AT5G56760 481 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10008567 [exp] 431 / 1e-153 AT5G56760 482 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10016603 [exp] 314 / 4e-107 AT3G13110 430 / 2e-151 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10040503 [exp] 311 / 5e-106 AT3G13110 434 / 4e-153 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10010679 [exp] 249 / 3e-81 AT4G35640 448 / 6e-159 serine acetyltransferase 3;2 (.1) Lus10007424 [exp] 144 / 1e-40 AT4G35640 294 / 4e-98 serine acetyltransferase 3;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0536 [poplar] [flax] PF06426 [poplar] [flax] SATase_N Serine acetyltransferase, N-terminal CL0536 [poplar] [flax] HEXAPEP PF14602 [poplar] [flax] Hexapep_2 Hexapeptide repeat of succinyl-transferase
Representative CDS sequence Show only first row Show all	>Potri.015G147000.1 pacid=42776540 polypeptide=Potri.015G147000.1.p locus=Potri.015G147000 ID=Potri.015G147000.1.v4.1 annot-version=v4.1 ATGCCAACTGGAGAGCTCCGCTACCCATCGCCGCCACCAGTAAATTCCACCACCACGGTGGACGTCGAGGCGGGCTTGGTGTGGGCCCAGATAAAAGCAG AAGCGAGGCGGGACGCGGAGTCAGAGCCAGCTTTGGCCAGCTACCTGTATTCGACAATCCTGTCTCACTCGTCTTTGGAGAGGTCGCTCGCCTTTCATTT AGGGAACAAGCTCTGCTCTTCAACGCTTCTCTCAACTCTCTTGTACGATCTCTTCCTCAACACTTTCACTTCAGACCCTTGTCTTCGCGCCGCTGCTGTT GCTGATCTTCGCGCAGCACGTGTTCGTGACCCTGCTTGCGTTTCTTTCTCTCACTGCCTCCTCAATTACAAAGGTTTCTTGGCTTGCCAGGCTCATCGAG TTGCTCACAAGTTGTGGACTCAGTCTCGTAGGCCATTGGCGTTGGCTTTACACTCTCGAGTCTCTGATGTTTTTGCCGTTGATATACACCCAGCAGCAAA GATTGGCAAAGGTATACTTTTTGATCATGCAACTGGGGTGGTCATTGGTGAAACAGCAGTGGTTGGGAACAATGTCTCCATTTTGCATCATGTTACGCTT GGAGGAACAGGGAAAGCCTCTGGGGATCGCCACCCCAAAATCGGTGACGGAGTGTTGATTGGAGCTGGTGCCACCATTTTGGGGAATGTAAAGATTGGGG AAGGAGCAAAGATCGGAGCAGGTTCAGTAGTGCTAATTGATGTGCCCCCTCGAACCACTGCAGTTGGAAATCCTGCAAGGTTAGTGGGAGGAAAGGAAAA ACCAGCTAAGCATGAGGAATGCCCTGGAGAATCCATGGATCATACTTCATTTATCTCTGACTGGTCAGATTATATTATTTGA
AA sequence Show only first row Show all	>Potri.015G147000.1 pacid=42776540 polypeptide=Potri.015G147000.1.p locus=Potri.015G147000 ID=Potri.015G147000.1.v4.1 annot-version=v4.1 MPTGELRYPSPPPVNSTTTVDVEAGLVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLNTFTSDPCLRAAAV ADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALHSRVSDVFAVDIHPAAKIGKGILFDHATGVVIGETAVVGNNVSILHHVTL GGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGKEKPAKHEECPGESMDHTSFISDWSDYII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.015G147000 [exp]	0	1
AT5G14240			Thioredoxin superfamily protei...		Potri.017G066200 [exp]	4.24	0.8074
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G071850 [exp]	4.69	0.8525
AT1G10380			Putative membrane lipoprotein ...		Potri.010G040500 [exp]	7.74	0.8393
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.001G380100 [exp]	10.19	0.8329
AT5G14240			Thioredoxin superfamily protei...		Potri.001G334100 [exp]	17.02	0.7706
AT4G15770			RNA binding (.1)		Potri.010G024400 [exp]	20.24	0.7493
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	20.34	0.8166
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.007G123300 [exp]	21.81	0.7256
					Potri.005G150300 [exp]	23.15	0.7257
					Potri.008G020500 [exp]	23.87	0.7992

Compare expression of checked genes

Potri.015G147000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.