Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HCF106.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52440 209 / 2e-67 HCF106 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) AT5G28750 57 / 5e-10 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144300 [exp] 371 / 6e-131 AT5G52440 216 / 5e-70 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.005G053400 [exp] 66 / 4e-13 AT5G28750 117 / 3e-34 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.013G040900 [exp] 64 / 3e-12 AT5G28750 97 / 5e-26 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039254 [exp] 190 / 2e-59 AT5G52440 174 / 5e-53 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10027499 [exp] 179 / 7e-52 AT4G14147 254 / 2e-81 protein binding (.1.2) Lus10006588 [exp] 61 / 2e-11 AT5G28750 130 / 3e-39 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10015910 [exp] 56 / 4e-09 AT5G28750 103 / 2e-28 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02416 [poplar] [flax] TatA_B_E mttA/Hcf106 family
Representative CDS sequence Show only first row Show all	>Potri.015G147100.1 pacid=42776116 polypeptide=Potri.015G147100.1.p locus=Potri.015G147100 ID=Potri.015G147100.1.v4.1 annot-version=v4.1 ATGGTAATGGCATCCCTAATTTCGAACTCAGCACCCTTATGTTCGACTTCAACAAGCACAAAATCAGCTCTTTACCCTCTCCCCTCCTCTTCCTTCATTC CTTACCATAAAGCACCTCAATTTGGTCTCTCTACATCGATTGCTCTACCGGGTCTTGGTCCTTTCTCTCAATGGAGTGGTTTAAAGCATCTGGATATTTC AACTCCTCCAAGATTTATTCGTAAAGAGAGGAAACGAAGGTGTAAGGGCAAGGTGATTCATGCATCATTGTTTGGTGTTGGAGCTCCTGAGGCTCTGGTT ATTGGTGTGGTGGCTTTGCTAGTTTTTGGCCCCAAAGGTCTTGCTGAGGTTGCACGCAATCTAGGGAAAACTTTGCGTGCATTTCAACCCACAATTAAAG AACTCCAGGAGGTGTCAAGGGAATTCAAGAGCACCCTTGAGCGAGAGATTGGGCTTGATGAAATTTCAAATCAAACACAAAACACATATAACTCCAAGAT AACAAACACTGCCTCAACCCCTTCATCAGCTGGCAGCACCAATATTTCTACAACTGTGGCTGACCCTAATGGTGCTCCATCCCCAAACAAGTCGTATACC AGTGAAGAGTACTTGAAAATCACAGAAGAGCAGCTAAAAGCATCCGCTGCCAAACAACAGGGGCAGCCACCCCCTCCAGCAGAAAGTCAGTTGGAACCTC AAGCTCAGCCTCAGCCACAAGAGACTACCAAAGCAATGCCTCCTCCAGAAAAGCTGGAAAATGAAGCACAAAACTCATAG
AA sequence Show only first row Show all	>Potri.015G147100.1 pacid=42776116 polypeptide=Potri.015G147100.1.p locus=Potri.015G147100 ID=Potri.015G147100.1.v4.1 annot-version=v4.1 MVMASLISNSAPLCSTSTSTKSALYPLPSSSFIPYHKAPQFGLSTSIALPGLGPFSQWSGLKHLDISTPPRFIRKERKRRCKGKVIHASLFGVGAPEALV IGVVALLVFGPKGLAEVARNLGKTLRAFQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYNSKITNTASTPSSAGSTNISTTVADPNGAPSPNKSYT SEEYLKITEEQLKASAAKQQGQPPPPAESQLEPQAQPQPQETTKAMPPPEKLENEAQNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G147100 [exp]	0	1	Pt-HCF106.1
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	1.41	0.9823
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	2.82	0.9802
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	4.89	0.9794
AT3G09050			unknown protein		Potri.006G096700 [exp]	5.91	0.9792
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	6.00	0.9786
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	7.00	0.9781
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	7.07	0.9756
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	7.93	0.9795
AT2G44870			unknown protein		Potri.004G030100 [exp]	8.94	0.9773
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.002G063400 [exp]	10.58	0.9739

Compare expression of checked genes

Potri.015G147100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.