Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09980 899 / 0 EMB1691 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) AT4G10760 129 / 2e-30 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144400 [exp] 1909 / 0 AT4G09980 874 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.001G085200 [exp] 138 / 5e-33 AT4G10760 627 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014971 [exp] 1252 / 0 AT4G09980 927 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10038853 [exp] 1242 / 0 AT4G09980 929 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10010408 [exp] 135 / 4e-35 AT4G10760 447 / 2e-154 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10010405 [exp] 136 / 1e-32 AT4G10760 818 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10012141 [exp] 134 / 6e-32 AT4G10760 807 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05063 [poplar] [flax] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Potri.015G147200.2 pacid=42776072 polypeptide=Potri.015G147200.2.p locus=Potri.015G147200 ID=Potri.015G147200.2.v4.1 annot-version=v4.1 ATGGAGTCGCCGCCTGAACGTTCTAGTCGTAGTTATGCGAAACGGGATGCAGAAGATAGCTCAGATGTCAAGAGTGATAGGGGTGGGGATGATGACGAGT GGGATGGAAGTGATAAGAGGAAACACAGGTCAACCAAGTCTAGGAAGTCCACCTCTGGGGATGATGCTGAAGGATTTGATGGCAGTGGGAGAAGGAGAAG TTCTACTGGGGACAGGAGTGATTCTCGTAAGAGGGGCGGTGGCTGCAGCAGCGCTGTGTCTATCAAAGCAGGCAGTGATGAAGATGATTACGAGACAAGA AAAGACACGCGCTCCAAGCAATTGAAGAAAAAGCAAGATGAAAGTAGTTTGGAAAAGTTGAGCAGTTGGTATCAGGATGGAGAATTAGACAACAAGCAGG GTGGAGGAGACAAGTCTGTGAGTAAAGGCCATGTTCAGCCTGATGAAAGCGAGAGAAGAAAATTGACATCGAAGATCTCAAAGCATGAGGGTTCCCGTAC TGCAATTAAAAGTAAAGAAGAAAGATCCTATGACGGAGAGAATGAGAAGGCACTAGATAGAGATACTAGATATTCAGAAAGGAAGGATAGCAGCCGAGAG AAAGGTCACAGTTCCGCTGAGGCAGGGAAAAACTCGAGGAGAAGGGGTGATGAATCTGACTCCAACAGGAAAGCTGAAGAAACTCTTTCTGAGAAGCCTG GTCCCAGAAGTGGAAAGGTGTCTGATTCCAAGTACGAGTCTAAAGAAAGAAGTGCCAGAAACGAACCCAGCGAGAGCAAAAGCAGAGGTTTGGATTCAAA CAGTGAAAAGGGCGTCAAAACTAGCAACAGAGATGACAGAAGAGTCGAGGCAGAGAGGGAGAAGTATAAGAGTAAAGGCAGGTCAGAAACCGCTGAAGAG GATAATAGGGCTAGTCCTCTTACCCGTGAAGATAGATCAGGTCGGGAGACAATTGAGAAGCACCGAGAGCAGAGAACTCCCACCAGAAGAGATGTTGCTG AAAGCCATGAAAGGTCCTCCAATGCAGAAGAAGATGGTAACACTTGGACTAGAGATAAAGGTGCAAGAGAGGTAGGGCGCTCTAACAGGTCCAAGACTCC CGAGAGAGGCATTAGGCGTCATCAAGATTTGCAACAATCTGAAATAGAGTATGAAAGAAATGTTGACATGAGACGGAAGGATCAAGAAAAGGATGGCTAC AGGGATGACAGATCAAAAGGCAGGGATGACAGCTGGAATGACAGGAATAGGGACAGGGAAAGTTCCAAAGAGAACTGGAAAAGAAGGCAATCCTCTGGGA ATGATAGAGAGCCTAAAGACGGGGACATTGCTTATGATCGTAGCAAAGACTGGGAGCCAAGACATGGTCGTGAAAGGAATGACAATGAAAGACCTCATGG TCGAAGCAGGGGTGAAGCTGTGAAAACCTCATCGAATTTTGGCATTTCAAATGATAATTACGATGTGATAGAGGTCCCTCTTGATCATGGACGACCAGAG TCCAGATCCAACTTTGCTAGGAGGATTGAGGCCAATCAGCAATCTGATGGAAGATCAGCACCAAACACAGAAGAGTGGGCATATATGCAAGATGAAAGGG CAAGAAGGAATGACTCACCTTTTGTTGGAGACTCAAAGGAAAAGTACATGGATGATGATGCACCTATGCGAGATCCGAGTTCTTGGAGGGATGACATTGA GTACCATGGAGGGAAAGGAAGAGGCCAGAAAGGGGCCATGCCCAGTCACGGTGGTGGCGGTCAAAGTTCGAGCAGTGGTTCACAGCCTCCATATGGAAAC CAGGATTCAGGCTCCTTTGGCAGAGGTCCTCTACAGGGATTAAAAGGGAGCAGAGTAGGGAGAGGAGGAAGGGTGAGGCCTGCTGGGAGAGATAATCAAC AAGTTGGACTCCCATTGCCTTTAATGGGATCACCTTTTGGGCATCTTGGAATGCCACATCCAGGAGCACTTCAGCCACTTGCTCCTAGTATGTCACCTGC TCCAGGTCCTCCAATTAGTCCAGGTGTCTTCATTCCACCATTTTCTCCACCAGTTGTTTGGGCTGGCGCCCGAGGTGTGGAGATGAATATGCTAGGTGTC CCCCCTGTTCTCTCTGCTGTTCCTCCTGGGCCAGCAGCCCCAAGATTTTCCCCTAACATGGGAACTCCTCCATCAAACCCTGCTATCTTTTTTAATCAAG CAGGACCTGGAAGGGGAGTGCCTCCGAGCATATCTGGTCCTGGTTTTAATGCTTCTGGACCAGTAGGACGAGGAACACCACCAGATAAAAGTGCTGGGGG TTGGGTTCCTCCTAGAAATAATGGTCCTCCAGGCAAAGCCCCTTCAAGAGGAGAACAGAATGATTACTCGCAAAATTTTGTTGATACTGGTATGCGACCC CAGAACTTTATCAGAGAGCTGGAGCTGACCAGTGTTGTAGAGGATTACCCCAAGCTTAGGGAGCTTATACAGAAAAAGGATGAGATTGTGGCTAAATCTG CTTCTCCTCCCATGTACATGAAATGCGACCTGCATGAGTTTGAGCTGTCTCCAGAGTTCTTTGGAACCAAGTTTGATGTTATTTTGGTGGACCCTCCATG GGAGGAATATGTTCACCGAGCCCCTGGTGTTGCTGACCATATGGAGTATTGGACATATGAAGAAATACTAAATCTTAAGATTGAGGCAATAGCTGATACA CCTTCTTTTATCTTCCTCTGGGTGGGTGATGGTGTTGGTCTTGAGCAAGGCCGACAATGTTTAAAGAAGTGGGGATTTCGGAGATGTGAGGATATTTGTT GGGTGAAGACCAACAAAAGCAATGCAACTCCAGGGCTGCGACATGATTCTCATACTTTGTTTCAGCATTCAAAGGAACACTGCTTGATGGGCATAAGAGG AACAGTTCGCCGCAGCACAGATGGTCACATAATCCATGCTAACATCGATACTGATGTAATTATTGCTGAGGAACCTCCATACGGTTCAACTCAAAAGCCT GAAGACATGTATCGGATAATTGAGCATTTCTCTCTAGGCCGCAGAAGGCTTGAGCTCTTTGGTGAAGATCACAATATTCGGTCTGGGTGGCTGACTGTTG GTAAAGGATTATCTTCATCAAATTTTAATTCTGAGGCATACATCAAGAATTTTTCTGACAAGGATGGTAAAGTTTGGCAAGGTGGGGGTGGAAGAAATCC TCCTGCCGAGGCACCTCATCTTGTTGTGACTACTCCTGATATAGAGGCTCTACGTCCCAAGTCACCAATGAAGAACCAGCAGCAGCAGCAGCAATCAGTA TCTATTTCTCTGACAACAGCCAATTCCTCCAACAGAAGGCCCGCAGGAAATTATTCTCCCCAGAATCCAAGCACTTTCGGTTTAAATCAAGAGGCCACTA GCTCCAACCCTTCAACTCCAGCCCCTTGGGCATCATCACCAATGGAGGGCTATAGAGGACGAGAAGGCGGGAATATGCCTTCAGAGGACAAGGTTTTTGA TGTGTATGGTTATAATGGGCAGGCAAATGCAGATTATCTAGATTTTGAATCTCACAGGCCTATGAATTTGTTGTAA
AA sequence Show only first row Show all	>Potri.015G147200.2 pacid=42776072 polypeptide=Potri.015G147200.2.p locus=Potri.015G147200 ID=Potri.015G147200.2.v4.1 annot-version=v4.1 MESPPERSSRSYAKRDAEDSSDVKSDRGGDDDEWDGSDKRKHRSTKSRKSTSGDDAEGFDGSGRRRSSTGDRSDSRKRGGGCSSAVSIKAGSDEDDYETR KDTRSKQLKKKQDESSLEKLSSWYQDGELDNKQGGGDKSVSKGHVQPDESERRKLTSKISKHEGSRTAIKSKEERSYDGENEKALDRDTRYSERKDSSRE KGHSSAEAGKNSRRRGDESDSNRKAEETLSEKPGPRSGKVSDSKYESKERSARNEPSESKSRGLDSNSEKGVKTSNRDDRRVEAEREKYKSKGRSETAEE DNRASPLTREDRSGRETIEKHREQRTPTRRDVAESHERSSNAEEDGNTWTRDKGAREVGRSNRSKTPERGIRRHQDLQQSEIEYERNVDMRRKDQEKDGY RDDRSKGRDDSWNDRNRDRESSKENWKRRQSSGNDREPKDGDIAYDRSKDWEPRHGRERNDNERPHGRSRGEAVKTSSNFGISNDNYDVIEVPLDHGRPE SRSNFARRIEANQQSDGRSAPNTEEWAYMQDERARRNDSPFVGDSKEKYMDDDAPMRDPSSWRDDIEYHGGKGRGQKGAMPSHGGGGQSSSSGSQPPYGN QDSGSFGRGPLQGLKGSRVGRGGRVRPAGRDNQQVGLPLPLMGSPFGHLGMPHPGALQPLAPSMSPAPGPPISPGVFIPPFSPPVVWAGARGVEMNMLGV PPVLSAVPPGPAAPRFSPNMGTPPSNPAIFFNQAGPGRGVPPSISGPGFNASGPVGRGTPPDKSAGGWVPPRNNGPPGKAPSRGEQNDYSQNFVDTGMRP QNFIRELELTSVVEDYPKLRELIQKKDEIVAKSASPPMYMKCDLHEFELSPEFFGTKFDVILVDPPWEEYVHRAPGVADHMEYWTYEEILNLKIEAIADT PSFIFLWVGDGVGLEQGRQCLKKWGFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIRGTVRRSTDGHIIHANIDTDVIIAEEPPYGSTQKP EDMYRIIEHFSLGRRRLELFGEDHNIRSGWLTVGKGLSSSNFNSEAYIKNFSDKDGKVWQGGGGRNPPAEAPHLVVTTPDIEALRPKSPMKNQQQQQQSV SISLTTANSSNRRPAGNYSPQNPSTFGLNQEATSSNPSTPAPWASSPMEGYRGREGGNMPSEDKVFDVYGYNGQANADYLDFESHRPMNLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	0	1
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	1.73	0.9324
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.008G114900 [exp]	2.82	0.9028
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Potri.005G206500 [exp]	3.00	0.9004	HVT1.2
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Potri.006G280200 [exp]	3.00	0.9124
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	3.46	0.9184
AT1G72390			unknown protein		Potri.001G165800 [exp]	4.00	0.9089
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	5.47	0.9064
AT3G02710			ARM repeat superfamily protein...		Potri.004G076600 [exp]	6.48	0.8953
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	7.48	0.9044
AT5G22450			unknown protein		Potri.010G238400 [exp]	8.12	0.9048

Compare expression of checked genes

Potri.015G147200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.