Plant FIBer expression Database

Potri.015G147500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52470 462 / 2e-165 ATFIB1, ATFBR1, SKIP7, FIB1 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
AT4G25630 451 / 4e-161 ATFIB2, FIB2 fibrillarin 2 (.1)
AT5G52490 357 / 4e-124 Fibrillarin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G144800
[exp]
491 / 9e-177 AT4G25630 463 / 1e-165 fibrillarin 2 (.1)
Potri.008G192700
[exp]
390 / 5e-137 AT5G52470 378 / 2e-132 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014969
[exp]
224 / 2e-72 AT5G52470 310 / 5e-106 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10039260
[exp]
212 / 1e-67 AT5G52470 312 / 3e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10027503
[exp]
211 / 2e-67 AT5G52470 313 / 2e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10038851
[exp]
199 / 3e-63 AT5G52470 221 / 9e-72 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10018028
[exp]
41 / 0.0002 ND 41 / 5e-05
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01269 Fibrillarin Fibrillarin
Representative CDS sequence
>Potri.015G147500.1 pacid=42775524 polypeptide=Potri.015G147500.1.p locus=Potri.015G147500 ID=Potri.015G147500.1.v4.1 annot-version=v4.1
ATGGCACCCCCTAGAGGTCGAGGTGGTAGTGGTGGTGGGTTTAGGGGAGGTAGAGGTGATGGAGGAGGAAGAGGTAGAGGCAGAGGTTTTTCAGGTGGAA
GAGGAGGAAGTGGTGGAAGGGGCAGTGCAATGAGGGGTGGTGGAAGAGGCCGCGGTGGTGGAAGAGGCCGCGGTGGTGGAGGAATGAGAGGTGGGAGCAA
GGTTGTGGTTGAGCCCCATAGACATGAAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATATGGTTCCTGGTGAGACTGTATAC
AATGAGAAGAAAGTCTCTGTTCAGAATGAAGATGGAACTAAAGTCGAGTACAGGGTTTGGAACCCCTTCCGATCAAAATTGGCTGCTGCCATTCTTGGTG
GTGTTGATGATGTTTGGATTAAACCTGGCGCTAAAGTTCTTTACCTAGGAGCTGCTTCTGGTACTACTGTTTCTCACGTGTCTGATATTGTTGGCCCTAC
TGGAGTGGTATATGCGGTAGAATTTTCTCACAGAAGTGGGAGAGACTTGGTTAACATGGCAAAGAAACGGACCAATGTTATTCCCATAATTGAAGATGCC
AGACATCCTGCCAAGTACCGTATGCTAGTTGGAATGGTGGACGTGATCTTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTTTAGCACTCAATGCTT
CCTATTTTCTGAAAACTGGTGGTCATTTTGTCATTTCAATAAAGGCAAATTGCATCGACTCCACTGTTCCTGCAGAGGCTGTGTTCGAAAGTGAAGTGAA
AAAGATGGTGCAGGAGCAGTTGAAACCTAGTGAGCAGGTCACCCTTGAGCCATTTGAGCGAGACCATGCTTGTGTGGTAGGGGGCTACCGTATGCCAAAG
AAACAGAAAATTGCTGCTTAG
AA sequence
>Potri.015G147500.1 pacid=42775524 polypeptide=Potri.015G147500.1.p locus=Potri.015G147500 ID=Potri.015G147500.1.v4.1 annot-version=v4.1
MAPPRGRGGSGGGFRGGRGDGGGRGRGRGFSGGRGGSGGRGSAMRGGGRGRGGGRGRGGGGMRGGSKVVVEPHRHEGVFIAKGKEDALVTKNMVPGETVY
NEKKVSVQNEDGTKVEYRVWNPFRSKLAAAILGGVDDVWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA
RHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKTGGHFVISIKANCIDSTVPAEAVFESEVKKMVQEQLKPSEQVTLEPFERDHACVVGGYRMPK
KQKIAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52470 ATFIB1, ATFBR1,... SKP1/ASK1-INTERACTING PROTEIN,... Potri.015G147500
[exp]
0 1
AT3G03060 P-loop containing nucleoside t... Potri.001G458200
[exp]
2.44 0.8789
AT1G25260 Ribosomal protein L10 family p... Potri.011G156300
[exp]
3.46 0.8858
AT3G19360 C3HZnF Zinc finger (CCCH-type) family... Potri.004G169500
[exp]
4.12 0.8522
AT5G45775 Ribosomal L5P family protein (... Potri.006G181501
[exp]
5.91 0.8784
AT1G33140 PGY2 PIGGYBACK2, Ribosomal protein ... Potri.001G453900
[exp]
7.81 0.9079
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065700
[exp]
9.74 0.8503 LOS1.1
AT1G25220 WEI7, TRP4, ASB... WEAK ETHYLENE INSENSITIVE7, TR... Potri.010G102200
[exp]
9.84 0.8003 ASB1,Pt-TRP4.2
AT1G49410 TOM6 translocase of the outer mitoc... Potri.004G149200
[exp]
11.09 0.8939 TOM6.1
AT3G15460 Ribosomal RNA processing Brix ... Potri.011G122200
[exp]
15.49 0.8438
AT5G62050 ATOXA1, OXA1AT,... HOMOLOG OF YEAST OXIDASE ASSEM... Potri.001G091800
[exp]
15.87 0.8040 OXA1.2

Potri.015G147500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.