Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25640 522 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT4G00350 508 / 1e-176 MATE efflux family protein (.1) AT3G26590 385 / 2e-129 MATE efflux family protein (.1) AT5G38030 384 / 4e-129 MATE efflux family protein (.1) AT1G47530 379 / 4e-127 MATE efflux family protein (.1) AT1G12950 372 / 6e-124 RSH2 root hair specific 2 (.1) AT1G23300 365 / 2e-121 MATE efflux family protein (.1) AT1G11670 330 / 1e-107 MATE efflux family protein (.1) AT3G21690 328 / 4e-107 MATE efflux family protein (.1) AT1G33110 326 / 2e-106 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144900 [exp] 671 / 0 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G161200 [exp] 459 / 2e-159 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 400 / 5e-135 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 380 / 2e-127 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 346 / 4e-114 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 344 / 1e-113 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102100 [exp] 342 / 1e-112 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 330 / 5e-108 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 330 / 9e-108 AT3G21690 646 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039263 [exp] 553 / 0 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 552 / 0 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 550 / 0 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10036374 [exp] 472 / 1e-162 AT4G00350 749 / 0.0 MATE efflux family protein (.1) Lus10014760 [exp] 471 / 3e-155 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 390 / 5e-131 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 389 / 1e-130 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 389 / 2e-130 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 387 / 8e-130 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 374 / 4e-125 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.015G147600.2 pacid=42775551 polypeptide=Potri.015G147600.2.p locus=Potri.015G147600 ID=Potri.015G147600.2.v4.1 annot-version=v4.1 ATGGAGACCACCCCACTACTGCTTAACAATGAATCATCATCATCCTTATCACTACCTGCAGTGCCAGAGGAAGACTACTTGCCTGCAGCTTTCCCGACGT TCCAAGACTTTATTAAGACCGTCTTTTGGAAAGAGACTGTCAAGTTATGGAGGATTGCTGGTCCTATTGCCCTCAGTCTAGTCTGCCAGAATGGTACCAA CATCTTAACCTCTATCTTCGTTGGCCATCTCGGAAACTTGGAGCTCTCTGCCGTTTCAGTTTCCCTCTCTGTCATCATCACCTTCTGTTTCGGCTTCCTT CTTGGTATGGGGAGTGCACTCGAGACCCTCTGTGGTCAAGCTTTTGGTGCTGGTCAAGTTCATATGCTTGGTATTTACTTGCAAAGATCATGCATCATCT TACTCGTCACTTGTGTCATCCTCTTGCCCATTTTCATTTTCGCCGCTCCTCTCCTGAAAGTCCTTGGCCAAGAAGCTGCTCTTGCTGAACTTGCTGGGAA ATTCACTCTCCTGGCCATACCTAACTTGTTCTCATGGGCTATCTATTTCCCTACCCAAAAGTTCCTTCAAGCCCAACGCAAGGTTGGTGTAATTACCTGG ATTGCCGTTGTGGCTCTCGTTCTACACGCTTTGTGGCTGTGGCTCTTCATCTATGAGCTTGACTGGGGTATCACTGGTGCAGCAATCGCTTTTGACCTCA CCGGATGGCTAATTTCTTTGGCTCAAGCTGTGTACGTGATGGGTTGGTGTAAGGAAGGATGGCGTGGATTTAGTTGGTCAGCGTTTGAGGATATTTGGTC CTTTGTTACCCTCTCCATTGCCTCAGCTGTGATGCTTTGCCTGGAGATTTGGTATATGATGAGCATTGTTGTCCTCACTGGACATCTTGACAACGCAGTC ATTGCTGTTGGTTCCCTTACCATCTGCTTGAATATCAATGGGTTGGAACTAATGGTGTTCCTTGGAATAAACGCTGCTATAAGCGTTCGTGTCTCGAATG AGCTTGGGTTAGGGCATCCAAGGGCTGCAAAATACTCGGTCTATGTCACTGTATTCCAGTCTCTTGTGATAGGACTGGTTTGCATGGCTGTTGTGCTGAT AGCGAAGGACTATTTTGCCTACATCTTCACAAGCAGCAAAGTGATGCAAGTAGCTACCTCCAAGCTAGCCTTCATTCTAGCCATCACCATGGTTCTTAAC AGCGTCCAGCCAGTGATATCAGGTGTTGCTATCGGTGGTGGGTGGCAAGCACTAGTGGCCTATATCAACATTGGTTGTTATTATGTTTTTGGGCTCCCCC TTGGTTACCTGCTAGGATACAAAGCAAATTTGGGAGTCGAGGGAGTATGGGGTGGCATGCTAGGTGGAACCGCTCTGCAGACCTTGCTTCTGTTGATTAT ACTTTACAGAACCAACTGGAAAAAGGAGGTTGCACAAACAGCAGAACGCATGAAGAGGTGGGGTGGTGGCGGCCAGGATATCGATACTGATCAGAAGAAG GAGGAGATTAATTACCCCTAA
AA sequence Show only first row Show all	>Potri.015G147600.2 pacid=42775551 polypeptide=Potri.015G147600.2.p locus=Potri.015G147600 ID=Potri.015G147600.2.v4.1 annot-version=v4.1 METTPLLLNNESSSSLSLPAVPEEDYLPAAFPTFQDFIKTVFWKETVKLWRIAGPIALSLVCQNGTNILTSIFVGHLGNLELSAVSVSLSVIITFCFGFL LGMGSALETLCGQAFGAGQVHMLGIYLQRSCIILLVTCVILLPIFIFAAPLLKVLGQEAALAELAGKFTLLAIPNLFSWAIYFPTQKFLQAQRKVGVITW IAVVALVLHALWLWLFIYELDWGITGAAIAFDLTGWLISLAQAVYVMGWCKEGWRGFSWSAFEDIWSFVTLSIASAVMLCLEIWYMMSIVVLTGHLDNAV IAVGSLTICLNINGLELMVFLGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLVIGLVCMAVVLIAKDYFAYIFTSSKVMQVATSKLAFILAITMVLN SVQPVISGVAIGGGWQALVAYINIGCYYVFGLPLGYLLGYKANLGVEGVWGGMLGGTALQTLLLLIILYRTNWKKEVAQTAERMKRWGGGGQDIDTDQKK EEINYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.015G147600 [exp]	0	1
					Potri.001G287500 [exp]	2.82	0.9461
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154100 [exp]	3.16	0.9528
AT3G27110			Peptidase family M48 family pr...		Potri.001G330800 [exp]	3.60	0.9531
AT1G52855			unknown protein		Potri.011G124800 [exp]	8.36	0.9415
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	9.48	0.9443
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	10.24	0.9437	Pt-VAR2.3
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.007G023800 [exp]	11.22	0.9365
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.006G129700 [exp]	11.48	0.9403
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Potri.001G152600 [exp]	11.87	0.9526	Pt-CTF2.2
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036000 [exp]	13.85	0.9303

Compare expression of checked genes

Potri.015G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.