Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58110 152 / 6e-43 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G35490 121 / 6e-32 bZIP bZIP family transcription factor (.1) AT4G06598 100 / 1e-23 unknown protein AT3G58120 87 / 5e-19 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 84 / 4e-18 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G06070 64 / 3e-11 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G04840 63 / 5e-11 bZIP bZIP protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G014800 [exp] 172 / 2e-50 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.004G219100 [exp] 163 / 7e-47 AT1G58110 303 / 8e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.013G124400 [exp] 87 / 3e-19 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 87 / 4e-19 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G091900 [exp] 85 / 2e-18 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G242800 [exp] 65 / 1e-11 AT5G04840 228 / 2e-73 bZIP protein (.1) Potri.017G027400 [exp] 61 / 3e-10 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G074900 [exp] 59 / 3e-10 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.007G130800 [exp] 61 / 5e-10 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015457 [exp] 150 / 5e-42 AT1G58110 315 / 2e-105 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10039902 [exp] 84 / 1e-18 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002185 [exp] 83 / 9e-18 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017656 [exp] 82 / 2e-17 AT2G42380 305 / 1e-103 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10033630 [exp] 81 / 4e-17 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10008150 [exp] 55 / 2e-08 AT1G06070 346 / 4e-119 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019376 [exp] 54 / 1e-07 AT1G06070 384 / 6e-131 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G147800.1 pacid=42775288 polypeptide=Potri.015G147800.1.p locus=Potri.015G147800 ID=Potri.015G147800.1.v4.1 annot-version=v4.1 ATGGAAACTTTTTCCCTTTGTCCAAAAGAGAATCCAGCACGTACTTCTGGAAACCCCGTTGAAATGATTTTTCCACCCTACAGCACCGATTACATCTCTA CTTGTGCAATAGAATCTTCAGAGGGCTTTTTGAGGCCTGTGGAAGGAGAGTCGCACCATCAACGCGCCTCTTCTGATAGTTTTCTGGTTGAGCAATTATC TTGGCTTGATGATCTCCTGGATGAGCCAGACTTGCCTTTGTACAAAAGTCATCGACGTTCATCAAGTGACTCTGTTGCTTTCCTGGACACAGCAAGCAAG ACATTTAGGAAAGAGGAAACCATGCTCAAAACTAGTGCTGCAGCTGGTGGACCTACTTGGGAATTTCACACCATTAATTATCATGAAAATTCTTGGAAAA CTAGCTTTCATTCAGGTTCTACTCCTGACAAGGAAAAGAATAAGTCCAGGGAATCACCCCTGATTTCTGTGACCAGCAGTTCCAGTGGAGTTGTGCCTTC AACGGATAGCATTACTCTTCAAGACTTTGCTCCACGAGAACCAGCTGGAGTAGGTTTGCCATCGAAACCTATTGTTAAGCAAAATCAAGATGACTCAGAA GTCTCATCTAATGTTAATCATAATCCTTCTAAATCAAAAACGGATTCCAAACGTGCTAAGCAGCAATTCGCTCAGCGTTCACGTTTGAGAAAACTTCAGT ATATAGCTCAACTTGAAAGAAGTGTCCAAATATTAGAGGCTGAAGGATCTCAAGTTTCAGCCAATCTTGAATATCTATACCGACAAAGTCTCATACTCGG CATGGAAAATCAAGCCTTGAGGCAACGTTTGGATAGTTTATCACAGGAACAACTCGCAAAATACCTGGAGCAGGATATGCTAGAGAAAGAAATAGCAAGG CTTACGTTTTTATACCATCAAAAACAGCAGCAAGAGCAATGGCCGCGACAGCAGAAGCAAAAGCAAAATGAGCAACAGAATTACTCTACACACAATCTAT CTATAAGTAGAGGAGTGGAGTCACAGATGACTAACCTATATATATGA
AA sequence Show only first row Show all	>Potri.015G147800.1 pacid=42775288 polypeptide=Potri.015G147800.1.p locus=Potri.015G147800 ID=Potri.015G147800.1.v4.1 annot-version=v4.1 METFSLCPKENPARTSGNPVEMIFPPYSTDYISTCAIESSEGFLRPVEGESHHQRASSDSFLVEQLSWLDDLLDEPDLPLYKSHRRSSSDSVAFLDTASK TFRKEETMLKTSAAAGGPTWEFHTINYHENSWKTSFHSGSTPDKEKNKSRESPLISVTSSSSGVVPSTDSITLQDFAPREPAGVGLPSKPIVKQNQDDSE VSSNVNHNPSKSKTDSKRAKQQFAQRSRLRKLQYIAQLERSVQILEAEGSQVSANLEYLYRQSLILGMENQALRQRLDSLSQEQLAKYLEQDMLEKEIAR LTFLYHQKQQQEQWPRQQKQKQNEQQNYSTHNLSISRGVESQMTNLYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.015G147800 [exp]	0	1
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.001G261104 [exp]	5.29	0.9094
					Potri.001G298350 [exp]	6.32	0.8963
					Potri.001G448600 [exp]	7.21	0.8659
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Potri.005G182200 [exp]	8.77	0.8764	Pt-MADS2.2
AT2G39800		ATP5CS, P5CS1	delta1-pyrroline-5-carboxylate...		Potri.008G060200 [exp]	10.81	0.8312
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.006G235901 [exp]	17.02	0.8785
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G134100 [exp]	17.43	0.8551
					Potri.005G106550 [exp]	21.63	0.8686
					Potri.003G026712 [exp]	57.31	0.8633
AT5G53040		GRD, RKD4	RWP-RK domain-containing 4, GR...		Potri.015G011800 [exp]	71.24	0.8397

Compare expression of checked genes

Potri.015G147800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.