Plant FIBer expression Database

Potri.015G147900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37010 195 / 3e-53 unknown protein
AT1G65710 98 / 3e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G145200
[exp]
885 / 0 AT5G37010 212 / 3e-59 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031372
[exp]
201 / 1e-57 AT5G37010 171 / 2e-47 unknown protein
Lus10010952
[exp]
206 / 4e-57 AT1G65710 232 / 1e-67 unknown protein
Lus10020782
[exp]
169 / 2e-44 AT5G37010 191 / 1e-52 unknown protein
Lus10007363
[exp]
138 / 6e-34 AT5G37010 167 / 2e-44 unknown protein
Lus10031373
[exp]
75 / 2e-15 AT1G65710 96 / 2e-23 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G147900.1 pacid=42775716 polypeptide=Potri.015G147900.1.p locus=Potri.015G147900 ID=Potri.015G147900.1.v4.1 annot-version=v4.1
ATGGGCTGTTGTTTTAGCAAAAAAAATGAAGTTTCTTCTTCTTTGAATGCCTCCCAACCAATTCTAAACACTCTCAAGGTTGACAAGAATGAGATCCAAA
ACAACAACATGATGGTAGTTGAGGATAAGGAGGTCAAAAAACAGGTTGTAGAAGAAGGGAGCTTTGTCAAGAAAGAAATTTTTGTCATCAAACACAGGAA
AAGCCAAGATAGAGACAAACGCATCCCTCCTCCCAACCTCAATATTGCACCACTAGAAGAAGATGGCCCTGCGCCCACTGCTACTGCATCTGCTGCTGAA
ATATTATCGGGCAACAGCAACACCAATGTTGGTGCTCATAATATGGTTCTGAGAACATCAAGCTGCACAAAAGAAGAGGTAGATGCCATTCTCATTCAGT
GTGGAAGGCTTAGCCGCAGCAACTCTTCTGGAGCTGGAAAGCCCCCTTCTTCTGGCATAAAGTACTCCGGTTCCAAGAGGAGCTACGACTTTGATAATAA
TAATAATAATAATAATGACCAGGACCAAGATGTTGAGTCTTCCACTTCTGCTGATCATTATGATTTTAGAAAGAAAGGCAATGATGAAGACGATGGCGAG
GTTACAGCCGAGAGAAGGCAGCATCGCAACCGCCGCCGCCAATCCAGCAGGCCTTCTCCTTCTCCTTCTTCTCAAGGGAGGAGGAGGACACCCAGCAGGG
AAAGGGACCAGAACCAGCGCCCCAGCAGCAGAGAGAGGGGCAGTGGTAGCAGTGGGAGAAGGGTGAGTCGATCACCGGGTAGAAGGTCAGAAACAACCCA
AAACACAGGCGTTACTGCTGGAAATGCTAATGCTACTGTTAATGCTAACAATACTGGTGGTCCTAGTAATAGGCCTGGAAAATTGGTATCAGTCCCTGCC
ACTGTTTCTTCTTTAGTGGTGGATAAGAGCAACAATGGGGTTGAACCGCAAGCAACGGCTGGAATTAGGCGGATCTCAGTTAAGAGAAATGTTGGTGAGG
CAGCGTTGACCTGCTCAAGGATGGTCGCATCGCCAAGTTCCAAATCTCCTGCCAGAACCAATGCTAAGACCTCTAATGAGAATAATCAGCAGCCATCTCT
TAGCCGCAGCAATTCAAGAAAAGCAGACCAATCTCCTTACAGAAGAAATCCATTGAGTGAAATTGATCTCAATTCACTTCAATATTCGCAACCACCTGCC
AACAAGGCTACCTGCACCAGCAACAACAGAGCACGAATCAGAAACAAAGATATCGAAGGACAAGTGGTGGTGAAGGAATCTTTCAATCTTCTAAATCAGA
CTCCAATGAAGAAGCAAAATTCTGAGAAAAACAACAGAGTCAATGCTCAAGTGACTAATTGCAGAGGCAGCAGCATAGTTTCACTGGAAAACAAGATCTC
AAAGGAACAACAGATGGAAGAGGCTAAAGGACAGCCAACAGACATGACCACTGTAGTAGACTTGGGAGTTGAAAGCTTGAAGCCCCAGACATTAACCAGA
AGCAGGTCAGCTAGGCGGTCGCGAGACCTAGACCTCAATCCTGAAACTTTGTTGAATCCAACGCCTTCATATACCGCACTACTGCTGGAAGACATTCAAA
ATTTTCACCTGAAGAACACTCCTTCCTTTTCTCTCCCAGCTTGTGTCACCAAGGCCTGCTCTATTCTTGAAGCAGTCGCTGACCTGAATTCCACTACAAG
CTCCAACCTGTCATGTGCCTTCTCTTATGATAGAAGAAGCCCCCCTACAGTGGCTGCTGCTAATCTTGTTGGGAAGAAACCACCTGAGGCAAAAGACCCA
TTTGTAGAATCTGAGGTACTTGCAAGCGATGACCTTATAGAGCCAAGCTTTCACAAGTATGTAACAGTGAGAAGAGCAGGTACATTATGCGGGGAAGACA
TGGATGGTCAAGAATCGTCAGGCAGTGACAGCGTTGTTGGTGGCAGCCAACAGCATTTAGGATTTTCAACCTCTTCCTGGGAACCCAATTCAGCGGACTC
AATTGATCACTGGACTTCAAGATCCAACTGGAGAGATGAGGACGAGAAGAGCCCACTGGGATTTCAAAAGCATGAATTGTCTGAAACATGGCGTGATGTG
GAACAGGCCAGAAGGCCATTCAGTGGACAAAGGAGTGGAATTGGACGTGGGAGACTTGGTACAAGTAAAAATCTCCACTCAACTGCTATCCTTGCAAGTG
CTGCTTCAACATAA
AA sequence
>Potri.015G147900.1 pacid=42775716 polypeptide=Potri.015G147900.1.p locus=Potri.015G147900 ID=Potri.015G147900.1.v4.1 annot-version=v4.1
MGCCFSKKNEVSSSLNASQPILNTLKVDKNEIQNNNMMVVEDKEVKKQVVEEGSFVKKEIFVIKHRKSQDRDKRIPPPNLNIAPLEEDGPAPTATASAAE
ILSGNSNTNVGAHNMVLRTSSCTKEEVDAILIQCGRLSRSNSSGAGKPPSSGIKYSGSKRSYDFDNNNNNNNDQDQDVESSTSADHYDFRKKGNDEDDGE
VTAERRQHRNRRRQSSRPSPSPSSQGRRRTPSRERDQNQRPSSRERGSGSSGRRVSRSPGRRSETTQNTGVTAGNANATVNANNTGGPSNRPGKLVSVPA
TVSSLVVDKSNNGVEPQATAGIRRISVKRNVGEAALTCSRMVASPSSKSPARTNAKTSNENNQQPSLSRSNSRKADQSPYRRNPLSEIDLNSLQYSQPPA
NKATCTSNNRARIRNKDIEGQVVVKESFNLLNQTPMKKQNSEKNNRVNAQVTNCRGSSIVSLENKISKEQQMEEAKGQPTDMTTVVDLGVESLKPQTLTR
SRSARRSRDLDLNPETLLNPTPSYTALLLEDIQNFHLKNTPSFSLPACVTKACSILEAVADLNSTTSSNLSCAFSYDRRSPPTVAAANLVGKKPPEAKDP
FVESEVLASDDLIEPSFHKYVTVRRAGTLCGEDMDGQESSGSDSVVGGSQQHLGFSTSSWEPNSADSIDHWTSRSNWRDEDEKSPLGFQKHELSETWRDV
EQARRPFSGQRSGIGRGRLGTSKNLHSTAILASAAST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G37010 unknown protein Potri.015G147900
[exp]
0 1
AT5G27550 P-loop containing nucleoside t... Potri.013G020700
[exp]
7.34 0.9459
AT3G10310 P-loop nucleoside triphosphate... Potri.006G048600
[exp]
9.38 0.9414
AT1G72250 Di-glucose binding protein wit... Potri.011G140000
[exp]
10.53 0.9406
AT3G16490 IQD26 IQ-domain 26 (.1) Potri.001G190500
[exp]
10.58 0.9184
AT2G36080 B3 ABS2, NGAL1 AP2/B3-like transcriptional fa... Potri.016G074500
[exp]
12.04 0.8634
AT1G67680 SRP72 RNA-binding domain (.1) Potri.006G216400
[exp]
13.03 0.9155
AT5G60930 P-loop containing nucleoside t... Potri.002G106100
[exp]
14.69 0.9391
AT2G33793 unknown protein Potri.004G042800
[exp]
18.46 0.9202
AT1G49660 ATCXE5 carboxyesterase 5 (.1) Potri.004G143100
[exp]
19.74 0.8919
AT3G20150 Kinesin motor family protein (... Potri.001G360200
[exp]
20.34 0.9356

Potri.015G147900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.