Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36970 227 / 2e-74 NHL25 NDR1/HIN1-like 25 (.1) AT1G65690 216 / 4e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 159 / 8e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 100 / 4e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 81 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 72 / 8e-15 NHL2 NDR1/HIN1-like 2 (.1) AT2G35980 65 / 3e-12 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 64 / 5e-12 NHL3 NDR1/HIN1-like 3 (.1) AT2G27260 63 / 2e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 61 / 4e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145500 [exp] 359 / 6e-126 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.017G154000 [exp] 195 / 2e-61 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 177 / 1e-54 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 120 / 3e-32 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 110 / 1e-28 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.013G135800 [exp] 83 / 8e-19 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 82 / 4e-18 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 77 / 2e-16 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 76 / 4e-16 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007364 [exp] 234 / 2e-76 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 225 / 1e-73 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10031888 [exp] 162 / 6e-49 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 153 / 3e-45 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037638 [exp] 84 / 1e-18 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 81 / 7e-18 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10033705 [exp] 77 / 2e-16 AT1G65690 114 / 1e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 74 / 3e-15 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031635 [exp] 71 / 3e-14 AT1G65690 101 / 9e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 64 / 4e-12 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.015G148200.1 pacid=42776034 polypeptide=Potri.015G148200.1.p locus=Potri.015G148200 ID=Potri.015G148200.1.v4.1 annot-version=v4.1 ATGGATATGGCAAATCATCAGAAGATTCATCCGCTCAATATGAGTAGTAGTGCCCATGATGATCAACAACTAGATGCTGAGGCACCACAGGCTCCCACGG TTCCATTGGTGCCCCGAGGCTCCTCCAAATCTGATAAAGGCGATGCAGCTGCACATCTCCTTCCTCGTGACAACCAGCACTACCCTCCTTTTCAGCGTAC AATCCCGGTCATCCACACTAAACCACCCAAGGAGAGAAGCAGCTGTTGTTGCAGATTCTTGTGTTGGACACTCTCTCTTCTCTTCCTCCTCATTCTTCTC ATTGGAGTTGTTGCTGGAATTCTTTACCTTGTCTTCCAACCTAAACTCCCAAAGTACTCCATCGATCGGTTGCAAATTACCCAATTCAATCTCACAAACA ATTCCAGCTTAACTGCAACCTTCGATGTCACCATCACGGCTAGGAATCCCAACAAGAAAGTGGGCGTCTACTATGAGGGAGGGAGCCATATAAGCGTGTG GTACACAGGCACAAATCTATGTCAAGGTTCGCTGCCAAGATTCTACCAGGGTCACAGGAACACCACCGTGCTTAATGTGGTGTTATCAGGACAAACAAAT GATGCCAATACATTGATCACTTCACTGCAACAGCAACAGCAGCAGACTGGAATCATTCCTTTGAACCTCAGGGTTATTCAGCCTGTGAGAATCAAGTTTG GCAAGTTGAAGATCATGAAGGTGAAGTTCAGGGTCAGATGCAGACTAGATGTCGACAACTTAGCTGCTAATAACGCCATTAATATTAGAAATAGTAGCTG TAAGTTTAGGTTTAGGCTATAA
AA sequence Show only first row Show all	>Potri.015G148200.1 pacid=42776034 polypeptide=Potri.015G148200.1.p locus=Potri.015G148200 ID=Potri.015G148200.1.v4.1 annot-version=v4.1 MDMANHQKIHPLNMSSSAHDDQQLDAEAPQAPTVPLVPRGSSKSDKGDAAAHLLPRDNQHYPPFQRTIPVIHTKPPKERSSCCCRFLCWTLSLLFLLILL IGVVAGILYLVFQPKLPKYSIDRLQITQFNLTNNSSLTATFDVTITARNPNKKVGVYYEGGSHISVWYTGTNLCQGSLPRFYQGHRNTTVLNVVLSGQTN DANTLITSLQQQQQQTGIIPLNLRVIQPVRIKFGKLKIMKVKFRVRCRLDVDNLAANNAINIRNSSCKFRFRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.015G148200 [exp]	0	1
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.018G003800 [exp]	1.41	0.9774
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185100 [exp]	2.44	0.9760
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	2.82	0.9762
AT1G56140			Leucine-rich repeat transmembr...		Potri.001G082900 [exp]	3.46	0.9722
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	3.87	0.9700
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.008G164466 [exp]	5.47	0.9669
AT2G22790			unknown protein		Potri.007G008900 [exp]	6.48	0.9608
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Potri.014G020700 [exp]	8.36	0.9524
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025900 [exp]	8.94	0.9600
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.009G007100 [exp]	9.16	0.9473

Compare expression of checked genes

Potri.015G148200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.