Plant FIBer expression Database

Potri.015G148300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02680 473 / 6e-163 ATNBS1, NBS1 nijmegen breakage syndrome 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020784
[exp]
483 / 1e-165 AT3G02680 428 / 7e-144 nijmegen breakage syndrome 1 (.1)
Lus10007365
[exp]
357 / 2e-118 AT3G02680 199 / 1e-57 nijmegen breakage syndrome 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0357 SMAD-FHA PF00498 FHA FHA domain
Representative CDS sequence
>Potri.015G148300.1 pacid=42775114 polypeptide=Potri.015G148300.1.p locus=Potri.015G148300 ID=Potri.015G148300.1.v4.1 annot-version=v4.1
ATGGTGTGGGGTCTTTTTCCGGTCGATCCTCTTTCAGGTGAAGACAAATATTATATCTTTACAAAAGGTGTCTACAAAGTTGGCCGAAAAGGTTGTGATG
TAATTATTTGCAAAGACAAAGGTGTTTCTCGAATCCATGCAGAATTAGTTGTTGATGAAATGATTTCAATGGATCATCCTCTGCACATGAAATCTGACCT
ACCCTCCCGAGTTCTGATTAGAGATTGCTCCAAGTATGGAACATACATTAACAAGGAAAAGGTACATAAGTTCCTAAATAAAGAAACATCTTTAAAAGAT
GGAGATGTGGTTTCCTTTGGAACTGGTACTGCCGTCTACAGGTTCTGTTTTGTTCCACTCGTATTTTTCGTCTACTGTTCCGAGTCCTTTCAAGTGGATC
AGCTTCTTCGAGACAAAGTCTCATCAATTGGTGCTTGCATTACCTACAATTTGAGTGAAGAGTGCACACATGTTCTTGCTGATGAACTCATGCCAGTTAA
AGAACATCTTGTTGATGCTATTGTGTCTAAGAAACCTATTGTTCTCAGGAGTTGGGTTGAGTTGGTTGCAGAAAAAAGGATTGGATTAGAAATTCCTAGC
TGGAGCTCCTATATTCCTACATTGACAGTGGAAGGAGTATCAGTCAAAGTTGCAGCATCAGGAACTCGTGCTAAGTGTTTGGAAGGATTCACCTGTCTAC
TGGAATCAATAAATATGTACAAGTTCAAGGACAGGTTGCAGTCTCTGTTGGAAGTATGCGGCGCAAAGATTGTTTTAGTAGAAGAATTCTGTTCAAATGC
CAAAGGTTTGGATTGTGGGCAAGACAGTCATGTGGTATGCGTCATCCCCAGAGGATCACCAGACAAGTTTAATTTGTTCAACAAGCTGGGTTCATTGTCT
AGAGTGAATGAGTTGGATCTGTTAAGAGCTGTTTTAGCCGGACATCTAGACTTGTCTGTTTTGGTATCACCATCTGTTCTTGTTTCATCATCATGCTCTA
CTGATGAGACAGTAGTAGCAGATTCTGAGGCAGAAGTGGAAACACCAACATCAGAGCATTTCACTGCAGATATCTCCAATGAAGAAGCGCCAAAATATGT
GAACAAACTGGAAATGTCAATTGACCCTCATCTTAGATCAGAAAATAACCATGTTGTAAGCTCTACTTACAGTATTGGTAAGATGACAGCAAAACGAGAA
ACAGTTGATGAGGCTGAAAGTGGAAATTCTGATATTATTTATAGCCAAGATTTAATCATTAGAGATTTGAATTTACCTGCTCAAATCAGTTCGACTCCAA
ATAATGAAGTTTTGAATTTCAAACGCTTCAGAAAGGGTAACACTCAATCAGGGAATAGTTTCAACAATCTGATTCCATTCTCGAAATATCCATACAAAGA
TTTTGACTATGGGAATCAGGATATGCTCGAGTCTGTGAAGGAAGAGAAAAGGCGAAAGCAAATGGAAGCAATTGCAGAGGACTTATTCAACACTGAAAAG
GGAAGGCGGCGTGGAGTTGCTGGTTCTCTTCACGTACTTCTTACACGTGGCTGA
AA sequence
>Potri.015G148300.1 pacid=42775114 polypeptide=Potri.015G148300.1.p locus=Potri.015G148300 ID=Potri.015G148300.1.v4.1 annot-version=v4.1
MVWGLFPVDPLSGEDKYYIFTKGVYKVGRKGCDVIICKDKGVSRIHAELVVDEMISMDHPLHMKSDLPSRVLIRDCSKYGTYINKEKVHKFLNKETSLKD
GDVVSFGTGTAVYRFCFVPLVFFVYCSESFQVDQLLRDKVSSIGACITYNLSEECTHVLADELMPVKEHLVDAIVSKKPIVLRSWVELVAEKRIGLEIPS
WSSYIPTLTVEGVSVKVAASGTRAKCLEGFTCLLESINMYKFKDRLQSLLEVCGAKIVLVEEFCSNAKGLDCGQDSHVVCVIPRGSPDKFNLFNKLGSLS
RVNELDLLRAVLAGHLDLSVLVSPSVLVSSSCSTDETVVADSEAEVETPTSEHFTADISNEEAPKYVNKLEMSIDPHLRSENNHVVSSTYSIGKMTAKRE
TVDEAESGNSDIIYSQDLIIRDLNLPAQISSTPNNEVLNFKRFRKGNTQSGNSFNNLIPFSKYPYKDFDYGNQDMLESVKEEKRRKQMEAIAEDLFNTEK
GRRRGVAGSLHVLLTRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02680 ATNBS1, NBS1 nijmegen breakage syndrome 1 (... Potri.015G148300
[exp]
0 1
AT3G51830 ATG5, SAC8 SAC domain-containing protein ... Potri.016G118300
[exp]
3.00 0.7412 ATG5.1
AT4G26640 WRKY ATWRKY20, WRKY2... WRKY family transcription fact... Potri.011G087900
[exp]
14.79 0.6199 Pt-WRK.1
AT3G56850 bZIP DPBF3, AREB3 ABA-responsive element binding... Potri.001G220700
[exp]
20.14 0.7214
AT5G27000 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABID... Potri.013G011500
[exp]
25.74 0.7163
AT5G56340 ATCRT1 RING/U-box superfamily protein... Potri.019G032500
[exp]
27.42 0.7104
AT4G08790 Nitrilase/cyanide hydratase an... Potri.008G047100
[exp]
35.74 0.5935
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Potri.001G280100
[exp]
40.49 0.7017
AT1G16290 unknown protein Potri.008G084100
[exp]
43.31 0.7019
AT4G02830 unknown protein Potri.005G208800
[exp]
44.04 0.6900
AT4G33380 unknown protein Potri.002G127700
[exp]
48.49 0.6787

Potri.015G148300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.