Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80260 431 / 3e-137 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G20570 386 / 2e-120 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT3G43610 68 / 3e-11 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT3G53760 65 / 1e-10 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT5G17410 57 / 3e-08 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT5G06680 52 / 2e-06 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G184701 [exp] 442 / 8e-152 AT1G80260 358 / 4e-118 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.014G184801 [exp] 118 / 2e-29 AT1G80260 321 / 8e-103 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.014G128400 [exp] 62 / 2e-09 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.010G180700 [exp] 58 / 2e-08 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.009G153300 [exp] 57 / 6e-08 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.016G059900 [exp] 51 / 3e-06 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.006G194200 [exp] 50 / 9e-06 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018892 [exp] 394 / 9e-124 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 390 / 2e-122 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028670 [exp] 62 / 3e-10 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10029779 [exp] 62 / 1e-09 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10042807 [exp] 53 / 1e-06 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10016246 [exp] 49 / 1e-05 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10003353 [exp] 44 / 4e-05 AT3G43610 136 / 2e-38 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10008428 [exp] 44 / 0.0007 AT3G43610 715 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [poplar] [flax] GCP PF04130 [poplar] [flax] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G000100.2 pacid=42808911 polypeptide=Potri.016G000102.1.p locus=Potri.016G000100 ID=Potri.016G000100.2.v4.1 annot-version=v4.1 ATGTTTGCCCCACAAACCCAAAGAGAAGAAACATTTCGAAATCTGGGTGAAGGCATACATTATGCGACTCCAATCATCCCCTTGACGAGGAAGACAAGCG AAGTGGATCTGGTACGGGGTGTTGTTCAAATGATGCAAGGTCTGTCCAGTTCCCTTTTCTACTGGGACCAAAGTGGGCAGTGTTTTTGTGTTGCCAATGT TGGGATTTATGTCACTCACCTTTCCCACTCAACCCTTCACAACCTTCTATCTCGCTTCACCTACGCTGCCACTTGCTTGCAACTCGTCCATCTTCGTCTC AATCTTCCACACTCTTATTATGCTCTTCCCACTTTGAGGGCATTTGCGTCTGTCGCTTCTCACTGCCTTCTGAGGATGAGAGATGTTGCTTTGAAGGAAG AAATGAAGATGTGCCATTCTAACGAACAAGAAGATTTTGGAAACGAATTTACTCCTACTTTATTGGGATTGTCTAGTTCTTTATCAAGTCTCTGCTCAGC TGCTGAATATTTATTTCAAATTGTCCATGGAGCCATCCCCCAAGTGTGTTTTGAGCCTAATTCATCTGTTCCACCTGTTGAAATTGCTGTTCATATCCTT GACTATCTTTACACGAAACTGGATCAAGTTTGTCTCGTGCAAGGTGGTGAGGTGGAAGAGTATCTCATGCTACTCAATATGTTTGTGGGGAGTATAGTAC CCTATATTGAAGGTCTTGATTCATGGCTTTTCGAAGGAACACTTGACGATCCTTTTGAAGAGATGTTCTTTTATGCAAACAGGGCAATCTCGGTTGATAA GTCCGAGTTCTGGGAGAAGAGCTATCAGTTGAGACGATTACAGTGCAGGAAGTTAGATATTAATTCTTCCATACCTTTATCAAATAACAAGACAGGAATG GGTGAAAAAGATTCTATTCCTTTTTCTGAGTTCAAAAAAGGAAAAGAGCTTAACGTAAAGGAACTTCTAGTGTGTCCTTTGTTTATTAAGGAAATTTCTA AGTCAATTGTCTCTGCTGGAAAATCATTGCAGCTGATCCGCCATGTTCCTATTTCATTCTCAATGATGTTTGAAAAAAGGAGACATACAGATATTAATGT TTTTGGAGGTTCTAGTGATGACAGTGGTTTAAGCATTTGCCGACAGACCTTTGCAGGGTTAACCTTGTCGGAGATTTTTTGTGTATCAGTAGCAGGTCTT ATAGGCCACGGTGATCATATTTTCAGATACTTCTTGCAAAATGAGCAAAGTAAATCAAAGAGCGCCGCTCCTTTGGTGTCTGCCATAATTAGAAAGGAGG AGAACAAAGATGATGAAGGCTTGCACAAGTTCTTGATTAATACATTACTGCAGAGAAAGGTGATTGATTTAGAATGTGCACACAATTTTGGGATTGATTT TTCTGATTTGGAGGAAGAGCGCATGAAAACTGGTGCTGTGGATGAATTTCCCCTACAGGGAACATTCTTTCCAGAAAATCCAGCTATCACTGCATGTCAA AGTTTGCTTGACAAGAATAGAGATTCCTGGAAAATGTTGAACTTATCTAAAAATTTCTACCTACCTCCTTTGAATGATGAGCTGCCTAATACACCTACCC TTTCCTCAACTCCTCGTAAAAGTCGTCTGCACAACTTTGGCATAGATGGCCTTGATTCACTGAAATTCACATACAAGGTCTCTTGGCCACTTGAACTTAT TGCGAATACAGAGTCAATCAAGAAGTACAACCAAGTAATGGGGTTCCTGTTGAAGGTGAAGCGTGCAAAATTTGCTCTAGATAAAGCTCGGAGATGGATG TGGAAGGGTAGAGGTAATGCGACAAATAGCCGCAAGCATCACTGGTTAGTGGAACAGAAACTCCTACATTTTGTGGATGCCTTTCACCAGTATGTCATGG ACAGGGTATATCACAGCGCATGGCGTGAACTCTGTGAAGGTATGGCAGTAGCTGGGTCTCTGGATGAAGTCATTGAAGTACATGAGGCCTATTTACTATC AATTCAGCGACAGTGCTTCGTGGTTCCAGATAAGCTGTGGGCCTTGATTGCTAGCCGAATCAACAGCATCCTTGGACTGGCTCTGGATTTCTACTCCATA CAGCAGACATTAAGTAGCAGTGGAGCAGCTTCTGCAATGAAGGCTAGATGTGAAATGGAAGTGGAACGGATTGAAAAACAATTTGATGATTGCATTGCTT TTCTCCTCAGAGTCTTATCTTTGAAACTCAATGTGGGTAACTTCCCTCATTTGGCTGATTTGGTTACCAGAATTAACTACAACCATTTCTACATGTCTGA TAATGGAAACTTGATGACTGCCACTGGCTCTGAGATAGTGACTTCAAGACTTGGGAAGACCTTCGGATGA
AA sequence Show only first row Show all	>Potri.016G000100.2 pacid=42808911 polypeptide=Potri.016G000102.1.p locus=Potri.016G000100 ID=Potri.016G000100.2.v4.1 annot-version=v4.1 MFAPQTQREETFRNLGEGIHYATPIIPLTRKTSEVDLVRGVVQMMQGLSSSLFYWDQSGQCFCVANVGIYVTHLSHSTLHNLLSRFTYAATCLQLVHLRL NLPHSYYALPTLRAFASVASHCLLRMRDVALKEEMKMCHSNEQEDFGNEFTPTLLGLSSSLSSLCSAAEYLFQIVHGAIPQVCFEPNSSVPPVEIAVHIL DYLYTKLDQVCLVQGGEVEEYLMLLNMFVGSIVPYIEGLDSWLFEGTLDDPFEEMFFYANRAISVDKSEFWEKSYQLRRLQCRKLDINSSIPLSNNKTGM GEKDSIPFSEFKKGKELNVKELLVCPLFIKEISKSIVSAGKSLQLIRHVPISFSMMFEKRRHTDINVFGGSSDDSGLSICRQTFAGLTLSEIFCVSVAGL IGHGDHIFRYFLQNEQSKSKSAAPLVSAIIRKEENKDDEGLHKFLINTLLQRKVIDLECAHNFGIDFSDLEEERMKTGAVDEFPLQGTFFPENPAITACQ SLLDKNRDSWKMLNLSKNFYLPPLNDELPNTPTLSSTPRKSRLHNFGIDGLDSLKFTYKVSWPLELIANTESIKKYNQVMGFLLKVKRAKFALDKARRWM WKGRGNATNSRKHHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAVAGSLDEVIEVHEAYLLSIQRQCFVVPDKLWALIASRINSILGLALDFYSI QQTLSSSGAASAMKARCEMEVERIEKQFDDCIAFLLRVLSLKLNVGNFPHLADLVTRINYNHFYMSDNGNLMTATGSEIVTSRLGKTFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.016G000100 [exp]	0	1
AT5G38880			unknown protein		Potri.004G114600 [exp]	2.00	0.7782
AT5G47020			unknown protein		Potri.001G148300 [exp]	12.36	0.7514
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	27.71	0.6983
AT5G47020			unknown protein		Potri.003G086200 [exp]	40.06	0.7055
AT4G27220			NB-ARC domain-containing disea...		Potri.001G443400 [exp]	44.89	0.6897
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170400 [exp]	45.05	0.7063
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184801 [exp]	45.29	0.6351
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Potri.001G215200 [exp]	48.66	0.6620
					Potri.001G444875 [exp]	50.69	0.7137
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	53.16	0.7122

Compare expression of checked genes

Potri.016G000100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.