Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79610 725 / 0 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 679 / 0 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT3G05030 160 / 1e-42 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT3G06370 153 / 2e-40 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G27150 153 / 3e-40 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT5G55470 150 / 3e-39 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT2G01980 89 / 2e-18 ATSOS1, SOS1, ATNHX7 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) AT1G14660 60 / 3e-09 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134900 [exp] 160 / 6e-43 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 160 / 9e-43 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 157 / 2e-41 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G031500 [exp] 156 / 2e-41 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 152 / 7e-40 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.010G100900 [exp] 74 / 2e-13 AT2G01980 1363 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1) Potri.008G140700 [exp] 68 / 8e-12 AT2G01980 1345 / 0.0 ARABIDOPSIS SALT OVERLY SENSITIVE 1, ARABIDOPSIS NA+/H+ ANTIPORTER 7, sodium proton exchanger, putative (NHX7) (SOS1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039131 [exp] 615 / 0 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Lus10038727 [exp] 544 / 0 AT1G79610 749 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) Lus10040903 [exp] 159 / 3e-42 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10012801 [exp] 159 / 5e-42 AT3G05030 790 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 160 / 1e-41 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10033840 [exp] 154 / 2e-40 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 151 / 2e-39 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10004141 [exp] 148 / 2e-38 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 135 / 3e-33 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 133 / 1e-32 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.016G000200.1 pacid=42808975 polypeptide=Potri.016G000200.1.p locus=Potri.016G000200 ID=Potri.016G000200.1.v4.1 annot-version=v4.1 ATGTCGACTGTAGTGGAGGAATTGATGCAAATGCAGATATCACCGGCAGGAGGAGGAGGAGATTCGCAATCGCATCCAGGAAAGGAGCAGCAAGCAGCAG GAGTTGGCATACTCCTCCAGATCATGATGCTCGTCCTCTCCTTCGTCCTTGGTCATGTTCTTCGTCGTCACAGATTCTATTACCTGCCTGAGGCCAGCGC TTCTCTTCTCATTGGTTTAATTGTTGGTGCACTTGCTAACATCTCTAACACTGAAACAAGCATCAGGGCATGGTTTAATTTCCATGAGGAGTTTTTCTTC CTTTTCTTGCTTCCTCCCATCATATTTCAGTCAGGATTCAGTCTATCACCTAAACCATTCTTCTCTAACTTTGGAGCCATTGTCACATTTTCCATATTAG GAACTTTTATAGCTTCTGTTGTTACAGGTGTTCTAGTTTACCTTGGCGGTCTTATTTACCTCACTTACAGACTTCCATTTGTTGAATGTCTGATGTTTGG TGCTCTTATATCAGCAACCGATCCTGTTACTGTTCTGTCCATATTCCAGGAACTTGGCATAGATACGAACCTTTATGCTTTGGTGTTTGGAGAATCTGTC TTGAATGACGCTATGGCAATATCCTTGTACAGAACAATGTCCTCGTTAAAAAGTCATGCACCTGGACAGAATTTCTTCATGGTGGTCTTTAGGTTTCTTG AAACCTTTGTTGGCTCATTGTCTGCAGGTGTGGGAGTTGGATTTATTTCTGCATTGCTTTTCAAGTATGCTGGTTTGGATATTGACAATCTGCAAAACTT GGAATGCTGCCTTTTTGTCCTTTTTCCATATTTTTCGTACATGCTTGCAGAAGGTCTTGGCCTCACTGGTATAGTGTCCATATTGTTCACTGGAATTGTC ATGAAGCATTATACCTACTCAAATTTGTCAGAAAATTCACAGCGATTTGTTTCTGCATTTTTCCACCTGATATCATCACTAGCTGAGACATTTGTATTTA TATACATGGGATTTGATATTGCGATGGAACAGCATAGTTGGTCCCATGTTGGATTTATTTTTTTCTCAATTATATTTATTGGAGTTGCAAGGGCAGCGAA TGTCTTTTCTTGTGCATATTTAGTCAATTTGGTTCGACCTGCACCACGTCAAATACCTGTAAAACATCAGAAAGCGCTTTGGTACAGTGGACTTCGAGGG GCCATGGCTTTTGCCCTTGCGCTACAATCGGTTCATGATCTTCCAGAAGGACATGGCCAGACTATATTCACTGCAACCACTGCCATAGTTGTGTTGACGG TGCTTTTAATTGGAGGATCGACAGGGACTGTGCTCGAAACTTTGCAAGTTGTTGGTGATGACCATGATGGCCCCTTAAGTGAAAGTTTGGATGGAAATAA TGGTTACGTTGCTCCCTCTTACAATGAGGATGCCACATCAGGGAACAGGCTGAAGATGAAACTTAAAGAGTTTCACAAGAGCACTGCATCATTTACAGCA TTAGACAGGAATTACCTCACCCCGTTCTTCACGAGTCAGAATGGAGATGATGAAGAAGAACATGATGACCCGATGCCCAGTTCCAGGGGAAGGGGTTTCC TTGGCCATAACTGA
AA sequence Show only first row Show all	>Potri.016G000200.1 pacid=42808975 polypeptide=Potri.016G000200.1.p locus=Potri.016G000200 ID=Potri.016G000200.1.v4.1 annot-version=v4.1 MSTVVEELMQMQISPAGGGGDSQSHPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRHRFYYLPEASASLLIGLIVGALANISNTETSIRAWFNFHEEFFF LFLLPPIIFQSGFSLSPKPFFSNFGAIVTFSILGTFIASVVTGVLVYLGGLIYLTYRLPFVECLMFGALISATDPVTVLSIFQELGIDTNLYALVFGESV LNDAMAISLYRTMSSLKSHAPGQNFFMVVFRFLETFVGSLSAGVGVGFISALLFKYAGLDIDNLQNLECCLFVLFPYFSYMLAEGLGLTGIVSILFTGIV MKHYTYSNLSENSQRFVSAFFHLISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSIIFIGVARAANVFSCAYLVNLVRPAPRQIPVKHQKALWYSGLRG AMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTVLETLQVVGDDHDGPLSESLDGNNGYVAPSYNEDATSGNRLKMKLKEFHKSTASFTA LDRNYLTPFFTSQNGDDEEEHDDPMPSSRGRGFLGHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Potri.016G000200 [exp]	0	1
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.001G242333 [exp]	9.48	0.6251
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	11.22	0.6192
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.003G000500 [exp]	12.40	0.6450	CAND1.2
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	13.92	0.6575	Pt-UBP5.3
AT2G24170			Endomembrane protein 70 protei...		Potri.006G184200 [exp]	21.70	0.5006
AT2G03070		MED8	mediator subunit 8 (.1)		Potri.010G253100 [exp]	23.17	0.6440
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	24.33	0.6284
AT5G19950			Domain of unknown function (DU...		Potri.018G073100 [exp]	40.49	0.6182
AT3G61700			Plant protein 1589 of unknown ...		Potri.015G019500 [exp]	43.86	0.5669
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Potri.006G230300 [exp]	59.32	0.5512	HDA910

Compare expression of checked genes

Potri.016G000200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.