Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44190 226 / 1e-68 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT3G60000 210 / 1e-62 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 129 / 4e-32 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 126 / 6e-31 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 120 / 7e-29 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT5G43160 106 / 6e-26 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT2G24070 105 / 5e-24 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 67 / 8e-12 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 62 / 3e-10 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000400 [exp] 518 / 0 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 132 / 4e-33 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G181700 [exp] 128 / 7e-32 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 128 / 8e-32 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G295800 [exp] 128 / 1e-31 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 122 / 8e-30 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 119 / 9e-29 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 73 / 6e-14 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 74 / 1e-13 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039129 [exp] 267 / 9e-84 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10038729 [exp] 265 / 4e-83 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10010780 [exp] 125 / 5e-31 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10014636 [exp] 125 / 8e-31 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10010779 [exp] 125 / 1e-30 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 125 / 1e-30 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10033792 [exp] 124 / 3e-30 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 119 / 2e-28 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10007759 [exp] 103 / 1e-25 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10018555 [exp] 85 / 2e-17 AT2G20815 222 / 1e-65 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [poplar] [flax] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Potri.016G000300.1 pacid=42810227 polypeptide=Potri.016G000300.1.p locus=Potri.016G000300 ID=Potri.016G000300.1.v4.1 annot-version=v4.1 ATGGATGAAGAATCGATTACGATGATGCAAGAGAAGACAGCCATAGTCCCCAATCCCCCCAATCCTCCTCCTCGGAGGCCCAGGGTGAGGGAGGTCAGTT CCAGGTTCATGTCTCCAATTGCTTCCTCCTCCTCCTCCCTCTCACCTCTTCCTTCCAATAAGCAGCGCTCCAACTCCGTGCAGAGGCAGCGCCGCAACCA GGAAGCGGACGCCGACTGCAGCCCGCAGCGGAAACATCATCATCAGCGTGCTGTAATCAAGCTTTTTAAGGAGAACGAACCAAGATCCCAGAGTCACAGA CCCGATACCCCCACAATCAGCATCATCAACACGTCCTCTTCTTCTAAATTACGAATGATGCAGCAACGCTCCACCTCCAACATCAACATCTCATCGGCTG CTGCAAAGCTGTTACAATCCACTGGGATCTCCAATTCCACCGATTCTTCTTCCTCTTCTTCATCGGATCATGACAACATTAATCCTAATACTAAGAATAA CAACAATGATGTCAGAAGCTCTCTTCCTGATCTCCTCCGTGATACTGATGCTAGATTTCTAGCCGAGAGAAATCTCAACCGGCTTAATAATAGTAATAAC CCTTGTGCTTCCCCATGCTCCCGTTCTCTCAATTTGCAGCGATCTATAAGTAGCTGCGACCCCTCCTTGTTCCATTCACTCAAATCTACAAAACTGCCTC CAGTGGCTCCTTGCTCCAAGATCCCAAATGATGCTTCTAGAAAGACAAGGAAAGTTTCTAGTCACCAAGAAGATGTGCAATCTCTCAAGCTGCTTCACAA CCACTACCTGCAGTGGAGATATGTCAACGCAAAAGCACAGGCCTCTGCTCAAGCTCAGAGAAGAGAAACTGAGAGAAACCTGTATTCCCTTGGTGTCAAG ATAACAGAATTATACGACTCAGTGAAAAGAAAACGTGCAGAGCTTGGCCTTCTGCAGAGATTGAAAATTCTATGGACCATCGTTGAAGCTCAAATGCCGT ATCTGGATGAATGGGCTGCTTTTGAAATGGATTATTCGGTATCCCTGTCAGAAGCAATTCAAGCTTTGTTGAATGCCTCACTTCAAGTTCCTATCAGTGG AAATGTTAGAGTTGATATTAGAGAGGTAGGGGAGGCACTGAACTCTGCAACAAAATTAATGGACACAGTAGCTTTTAACATTGAAAGCCTTATGCCAAAG GCTGAAGAAACAGAACATTTGATCTCAGAACTAGCTAGGGTGACTGGAGGAGAAAAAGCTCTTATTGAAGAATGTGGGGATCTGTTGTCAATGACATATA ATTCACAGGTAGAGGAATGCAGCTTACGAGGGCAGCTAATTCAGTTCTATCGGAGCCGTCACAATCAACACCAGGAAGAGCAGCAATAA
AA sequence Show only first row Show all	>Potri.016G000300.1 pacid=42810227 polypeptide=Potri.016G000300.1.p locus=Potri.016G000300 ID=Potri.016G000300.1.v4.1 annot-version=v4.1 MDEESITMMQEKTAIVPNPPNPPPRRPRVREVSSRFMSPIASSSSSLSPLPSNKQRSNSVQRQRRNQEADADCSPQRKHHHQRAVIKLFKENEPRSQSHR PDTPTISIINTSSSSKLRMMQQRSTSNINISSAAAKLLQSTGISNSTDSSSSSSSDHDNINPNTKNNNNDVRSSLPDLLRDTDARFLAERNLNRLNNSNN PCASPCSRSLNLQRSISSCDPSLFHSLKSTKLPPVAPCSKIPNDASRKTRKVSSHQEDVQSLKLLHNHYLQWRYVNAKAQASAQAQRRETERNLYSLGVK ITELYDSVKRKRAELGLLQRLKILWTIVEAQMPYLDEWAAFEMDYSVSLSEAIQALLNASLQVPISGNVRVDIREVGEALNSATKLMDTVAFNIESLMPK AEETEHLISELARVTGGEKALIEECGDLLSMTYNSQVEECSLRGQLIQFYRSRHNQHQEEQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.016G000300 [exp]	0	1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	3.16	0.9344	CYP51.2
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	4.00	0.9390
AT1G28400			unknown protein		Potri.011G057500 [exp]	5.47	0.9328
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	9.53	0.9212
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	10.95	0.9265
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	12.84	0.9242
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	13.41	0.9145
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	15.16	0.9110	Pt-CLF.1
AT5G05620		TUBG2 ,ATGCP2	GAMMA-TUBULIN 2, ARABIDOPSIS T...		Potri.002G167800 [exp]	15.90	0.8976
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	16.24	0.8896

Compare expression of checked genes

Potri.016G000300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.