Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) AT1G01300 238 / 4e-73 Eukaryotic aspartyl protease family protein (.1) AT1G79720 228 / 3e-69 Eukaryotic aspartyl protease family protein (.1) AT3G61820 214 / 5e-64 Eukaryotic aspartyl protease family protein (.1) AT5G10760 214 / 6e-64 Eukaryotic aspartyl protease family protein (.1) AT3G18490 206 / 1e-60 Eukaryotic aspartyl protease family protein (.1) AT1G25510 199 / 3e-58 Eukaryotic aspartyl protease family protein (.1) AT3G20015 190 / 7e-55 Eukaryotic aspartyl protease family protein (.1) AT2G42980 190 / 2e-54 Eukaryotic aspartyl protease family protein (.1) AT3G59080 181 / 5e-51 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232600 [exp] 281 / 2e-89 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 276 / 2e-87 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 250 / 1e-77 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 250 / 1e-77 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.003G185175 [exp] 246 / 5e-76 AT1G79720 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 249 / 7e-76 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 237 / 1e-72 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 236 / 4e-72 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 228 / 4e-69 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038732 [exp] 364 / 1e-122 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 282 / 7e-90 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 248 / 8e-77 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 238 / 3e-72 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 231 / 3e-70 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10039126 [exp] 217 / 4e-68 AT1G01300 139 / 2e-38 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 192 / 4e-55 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10017362 [exp] 174 / 9e-49 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 171 / 1e-47 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 167 / 2e-46 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.016G000600.1 pacid=42809620 polypeptide=Potri.016G000600.1.p locus=Potri.016G000600 ID=Potri.016G000600.1.v4.1 annot-version=v4.1 ATGGAGAGCATAAGCTGCAAAAGCTTAGAAGCAATGATGGGGCTGCTCTGGATTATGGTTTGCTATCTGTCCCTAGCATCTTCATCTTCGCAAGCAAAAC CTAAAGCATATGTGCAATCCATCAACCAGTCCAGCATACATCTGAACATATATCACGTGCATGGACATGGCTCCTCACTCACCCCGAACTCCTCCTCACT TCTTTCTGATGTACTCTTGCATGACGAAGAACATGTTAAGGCTCTGAGTGACAGACTAGCAAATAAAGGTCTCGGTAGTGGGTCTGCCAAGCCGCCAAAA TCTGGACACCTCCTAGAACCAAATTCAGCTAGCATCCCATTGAATCCAGGTTTGTCCATTGGCTCTGGTAATTACTATGTAAAGTTAGGTCTTGGCACCC CTCCCAAGTACTATGCCATGATTCTCGACACAGGTAGTTCACTGTCCTGGCTCCAGTGCCAGCCCTGTGCAGTGTACTGTCATGCCCAAGCAGATCCCCT GTATGATCCCTCCGTATCTAAGACCTACAAAAAACTTTCATGTGCCTCTGTCGAGTGCTCCAGGCTCAAAGCTGCCACTTTGAATGACCCACTTTGCGAG ACAGATTCTAATGCATGCTTGTACACGGCCAGCTATGGGGATACTTCTTTCTCAATCGGCTATTTGAGTCAAGATCTATTAACCCTAACATCATCTCAGA CTTTACCCCAATTCACATATGGATGTGGGCAGGACAATCAAGGGTTGTTTGGAAGGGCAGCTGGTATCATAGGGCTAGCCCGTGACAAGCTTTCAATGTT GGCGCAGTTGTCCACCAAGTATGGACATGCCTTCTCCTACTGCCTCCCCACGGCCAATTCTGGATCTTCTGGAGGAGGCTTCTTGTCCATTGGAAGCATT TCTCCAACATCCTACAAGTTCACCCCTATGCTCACAGATTCAAAGAATCCCAGCTTATACTTTCTGAGACTGACAGCTATAACTGTGTCTGGTAGGCCAC TGGATTTGGCTGCTGCCATGTACAGGGTCCCGACCCTTATAGACTCCGGAACTGTTATAACACGACTGCCAATGTCCATGTATGCAGCACTGAGGCAGGC CTTTGTAAAGATCATGTCCACCAAGTATGCGAAAGCCCCAGCATATTCCATCTTGGACACTTGTTTCAAAGGGAGCCTCAAGAGCATATCAGCTGTGCCC GAGATTAAAATGATTTTTCAAGGAGGCGCAGACCTCACGCTCAGGGCCCCAAGCATTCTAATAGAAGCTGATAAAGGTATTACATGCTTGGCCTTTGCAG GTAGCTCTGGAACCAACCAAATTGCCATTATCGGAAACCGTCAGCAGCAAACATATAATATTGCTTATGACGTCTCAACTTCGAGGATTGGTTTTGCTCC TGGTAGCTGTCATTGA
AA sequence Show only first row Show all	>Potri.016G000600.1 pacid=42809620 polypeptide=Potri.016G000600.1.p locus=Potri.016G000600 ID=Potri.016G000600.1.v4.1 annot-version=v4.1 MESISCKSLEAMMGLLWIMVCYLSLASSSSQAKPKAYVQSINQSSIHLNIYHVHGHGSSLTPNSSSLLSDVLLHDEEHVKALSDRLANKGLGSGSAKPPK SGHLLEPNSASIPLNPGLSIGSGNYYVKLGLGTPPKYYAMILDTGSSLSWLQCQPCAVYCHAQADPLYDPSVSKTYKKLSCASVECSRLKAATLNDPLCE TDSNACLYTASYGDTSFSIGYLSQDLLTLTSSQTLPQFTYGCGQDNQGLFGRAAGIIGLARDKLSMLAQLSTKYGHAFSYCLPTANSGSSGGGFLSIGSI SPTSYKFTPMLTDSKNPSLYFLRLTAITVSGRPLDLAAAMYRVPTLIDSGTVITRLPMSMYAALRQAFVKIMSTKYAKAPAYSILDTCFKGSLKSISAVP EIKMIFQGGADLTLRAPSILIEADKGITCLAFAGSSGTNQIAIIGNRQQQTYNIAYDVSTSRIGFAPGSCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10770			Eukaryotic aspartyl protease f...		Potri.016G000600 [exp]	0	1
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.015G132200 [exp]	9.74	0.8479	Pt-ERL1.1
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.019G040400 [exp]	10.39	0.8151
AT3G06868			unknown protein		Potri.008G220700 [exp]	12.24	0.8590
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	14.89	0.8674
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	31.62	0.8332	Pt-BRI1.1
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.002G045000 [exp]	34.64	0.8568	AUX22.5
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.005G095800 [exp]	36.05	0.8163
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.009G069100 [exp]	38.05	0.8342
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	41.78	0.8336
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	56.92	0.8287	Pt-LACS2.2

Compare expression of checked genes

Potri.016G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.