Plant FIBer expression Database

Potri.016G000700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G000700.1 pacid=42809494 polypeptide=Potri.016G000700.1.p locus=Potri.016G000700 ID=Potri.016G000700.1.v4.1 annot-version=v4.1
ATGGGATGCATTTCTTCAAAACTTGTGTCTAGATCGTTGAGTTTTCAGGAAGAGCTGACCAAGAACATGCAGAGGTCGGCCAATGATATTCCTGCACTCG
AAGAACTGGCCATCTCTGGTAACATCAACGACCAGTTTTTTGCTCTTGTTTGCACTGCCAACACGGTAGCCTGCACATACAAGTCCGGGAGTTTTTCAGG
CAAATCCAACAATCCAGTTGTCGAACCTGATATCAGTCTAACAAAAACCAAATCGGAATTTAACTCGAGTCTGGAACAAGAAGGAGAGGAAAAACACACG
AGACTAGAAGCTAAATTGGTGCTCCCACAAGTACCAAGCATTGATCCAACGAAAAGATCCAAAAGCTGTCATTTTTTCCCAACAAATGAAGCCTCCTATC
CTTCTGTAGAGATTTTCCATGGGGTTGAAGAAAAGCGTAGGAACCACGAGGGAATGGAGCGTGCGACGAGTTTCCATACCATAGAGGAATTCGATGCCCT
GATTGAAAAGTTGAAGTTGTCTAAGGAGCAGAAAATAGGGTATGACGGAGGGGATGATGGTTCAGTAACAGGGGTGAAGCTTAACCAATTCCGATCTTCA
ACACATGCATCTGAACATTCTGCGGATAGTAACAATATCCAAGAAACACATTCACACATAAATGATAGCACTCCTCCAGAAGCAAACTCCATCATTGAAG
AGAATCCCACCTTATCAAATTCGGAGCTAGCAAGTGAAAAACTGATTGCAATTCCAAGTAGATCCAATACCGCAACTGAATCAGAAGTTGTAGAGGACTC
TTCACAAGGACACATCTTAAAGAAAGGTTTTAAAAGGAAGTCCATTGCAAAGGGGTTAGAATCAATTGAAATTCCACATACCATTGAATTCCCAGCCGTT
ACAGGCCTCAAGGAATGGCTCCGTGTTGGCGGACGAGTATACTCCCCTGGTGCTTATGTCACTCCAAAGTTTGGCAGCTATTCCTTTCCGATTAGTGGGA
CTTCAAATGAATGCAATGAGGAGGACATCTTCAATCCAGAATTGGTGGCTGCTAGTGAGGAGAGCATGGAACAACTTGAAGCAGAAGCCGAAAGTATTCT
CAAACAGATAGTTGAGAAATTGGAGGAAGAAAGTGGCTTGGAGAAGCAAGCCAAAGATGATTTTCTATCACACAACTCAATAGACTAA
AA sequence
>Potri.016G000700.1 pacid=42809494 polypeptide=Potri.016G000700.1.p locus=Potri.016G000700 ID=Potri.016G000700.1.v4.1 annot-version=v4.1
MGCISSKLVSRSLSFQEELTKNMQRSANDIPALEELAISGNINDQFFALVCTANTVACTYKSGSFSGKSNNPVVEPDISLTKTKSEFNSSLEQEGEEKHT
RLEAKLVLPQVPSIDPTKRSKSCHFFPTNEASYPSVEIFHGVEEKRRNHEGMERATSFHTIEEFDALIEKLKLSKEQKIGYDGGDDGSVTGVKLNQFRSS
THASEHSADSNNIQETHSHINDSTPPEANSIIEENPTLSNSELASEKLIAIPSRSNTATESEVVEDSSQGHILKKGFKRKSIAKGLESIEIPHTIEFPAV
TGLKEWLRVGGRVYSPGAYVTPKFGSYSFPISGTSNECNEEDIFNPELVAASEESMEQLEAEAESILKQIVEKLEEESGLEKQAKDDFLSHNSID

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G000700
[exp]
0 1
AT5G06100 MYB ATMYB33 myb domain protein 33 (.1.2.3) Potri.003G189700
[exp]
4.00 0.7990
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.003G008200
[exp]
9.38 0.7832
AT3G60360 EDA14, UTP11 U3 SMALL NUCLEOLAR RNA-ASSOCIA... Potri.006G026002
[exp]
11.22 0.7633
AT5G22770 ALPHA-ADR alpha-adaptin (.1.2.3) Potri.004G189700
[exp]
16.91 0.7145
AT4G03020 transducin family protein / WD... Potri.008G197200
[exp]
20.78 0.7438
AT5G07910 Leucine-rich repeat (LRR) fami... Potri.015G048800
[exp]
31.93 0.7107
AT1G79870 D-isomer specific 2-hydroxyaci... Potri.013G046150
[exp]
33.10 0.7455
AT4G08455 BTB/POZ domain-containing prot... Potri.002G077000
[exp]
36.05 0.7341
AT4G38690 PLC-like phosphodiesterases su... Potri.009G131600
[exp]
36.33 0.6911
AT3G13060 ECT5 evolutionarily conserved C-ter... Potri.014G001000
[exp]
38.17 0.7011

Potri.016G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.