Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17150 644 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 452 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 447 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G47590 49 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G20520 43 / 0.0003 WAV2 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 43 / 0.0003 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G62860 43 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000700 [exp] 909 / 0 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G029200 [exp] 445 / 1e-151 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 427 / 9e-145 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G227900 [exp] 49 / 3e-06 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G145200 [exp] 49 / 6e-06 AT5G20520 511 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G064800 [exp] 46 / 3e-05 AT5G20520 529 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039125 [exp] 684 / 0 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10038733 [exp] 593 / 0 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001114 [exp] 455 / 7e-156 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 449 / 1e-153 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 437 / 2e-148 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 421 / 4e-142 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 45 / 7e-05 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10027619 [exp] 44 / 0.0002 AT5G20520 479 / 4e-172 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10011949 [exp] 43 / 0.0004 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.016G001000.1 pacid=42809506 polypeptide=Potri.016G001000.1.p locus=Potri.016G001000 ID=Potri.016G001000.1.v4.1 annot-version=v4.1 ATGATTGATCAGTTCATCAATTTTGTAATTCGCCCTCCCAGGGCGGATTACAACCCAGATCAGTATTTATGGGAGAAGGATTTCACTCTTGCTGGTAGAG CATACAAGAGACAAGACTTGGAGCTTACCAATGCAAGGGGTCATACCTTGCGATGCAGTCATTACTTGCCTTCGCCTTTACCTGAAGATACTCACCTTCC TTGCGTTATATACTGTCATGGAAACAGTGGATGTAGAGCAGATGCAAATGAGGCTGCTGTAATTCTTCTTCCATCAAATATCACTGTTTTTGCTCTTGAT TTTTCGGGTTCTGGCTTATCTGATGGTGATCATGTGAGCCTTGGTTGGCATGAGAGAGATGACCTCAAAGTAGTGGTCTCGTATCTAAGAAGCAACAAAC AAATATCACGTATAGGCCTCTGGGGACGATCCATGGGTGCAGTCACTAGCCTTCTTTATGGAGCAGAAGATCCATCTATAGCTGGGATGGTTCTGGATAG TGCCTTTGCAAATTTATTTGATCTAATGATGGAACTTGTTGATGTGTACAAAATCAGGCTTCCAAAATTTACAGTTAAGATGGCTGTACAGTACATGCGA CGAGTGATTCAGAAGAAGGCAAAATTTGATATTATGGATCTTAACTGCCTAAAGGCAGCACCCAAAACATTCATTCCTGCTCTATTTGGGCATGCTAGCG AGGACAAATTCATTCAACCCCACCATGCTGACCTCATCTTTAACTCCTATGCAGGGGATAAAAACATTATAAAATTTGATGGGGACCACAACTCTTCTCG ACCACAGTTTTATTATGATTCGGTTTCCATTTTCTTTTTCAACATCCTTCACCCTCCTCAAACTTCAGCTTCTTCAAATAAGCTTGAGAGATATTACGAT TTGGGTGATTTGAAAGTCAGTGCTGGCATGGATGAGAGCCTCTTATATGAGATAATCACAGGCCTACGTTCAGCCTGTACCGATGTTGCAAGTTCTTCTT CTGTTCCTCTTAGCATTCCAACCAAGAAACCTGTGAGCGAACTTCTCTATGAAATTGCACCGTTTGCTAATATAGTGGATTCTGTGGCTAACGAAAATGC TGGGCCTTGCAGCGATGAGCCATCAAATTTGCAGGGAAAGCCAAATGGCCAGAGTGAGGACTGTTGCTCATATACAAGCTCTAATAGAGAGAGTTGGGGA AGATGCTCCTCCCTGGGAGGCAGTGATGAAGAATATCCTTCTGAATGCAGAGCTGTGGACAATAGCCATGAGATGACTCTAAAGGCATTTGCAACACCTC TAAGAAGCATACAACAAAAATCTCCAGACCCAGCAAAGGAGGAGGAGAAGAAGGAGAAGAAGAAGAAGAAGAAAGCTCTCACAGTGCCGAAGAAGCTCAA GGGTGACAAATTTGAAAAGCTTGAGGCTTTCAGCAAACGTCTACGACATTGCATTCTAAGGAGGGGAAACCACCAAAGGCATTGTTCTTCATGA
AA sequence Show only first row Show all	>Potri.016G001000.1 pacid=42809506 polypeptide=Potri.016G001000.1.p locus=Potri.016G001000 ID=Potri.016G001000.1.v4.1 annot-version=v4.1 MIDQFINFVIRPPRADYNPDQYLWEKDFTLAGRAYKRQDLELTNARGHTLRCSHYLPSPLPEDTHLPCVIYCHGNSGCRADANEAAVILLPSNITVFALD FSGSGLSDGDHVSLGWHERDDLKVVVSYLRSNKQISRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFANLFDLMMELVDVYKIRLPKFTVKMAVQYMR RVIQKKAKFDIMDLNCLKAAPKTFIPALFGHASEDKFIQPHHADLIFNSYAGDKNIIKFDGDHNSSRPQFYYDSVSIFFFNILHPPQTSASSNKLERYYD LGDLKVSAGMDESLLYEIITGLRSACTDVASSSSVPLSIPTKKPVSELLYEIAPFANIVDSVANENAGPCSDEPSNLQGKPNGQSEDCCSYTSSNRESWG RCSSLGGSDEEYPSECRAVDNSHEMTLKAFATPLRSIQQKSPDPAKEEEKKEKKKKKKALTVPKKLKGDKFEKLEAFSKRLRHCILRRGNHQRHCSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.016G001000 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	2.82	0.8233
					Potri.001G306100 [exp]	3.87	0.8434
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184701 [exp]	7.14	0.8272
					Potri.015G112801 [exp]	8.36	0.8224
AT1G19350	BZR	BZR2, BES1	BRASSINAZOLE-RESISTANT 2, BRI1...		Potri.016G125700 [exp]	8.36	0.8102
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Potri.005G256500 [exp]	8.48	0.8092
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Potri.004G218001 [exp]	8.71	0.8359
AT5G13340			unknown protein		Potri.019G001900 [exp]	9.79	0.8103
AT1G55535			unknown protein		Potri.001G001400 [exp]	10.24	0.7721
AT1G21080			DNAJ heat shock N-terminal dom...		Potri.005G260400 [exp]	12.96	0.7074

Compare expression of checked genes

Potri.016G001000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.