Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08050 155 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60710 155 / 2e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 154 / 4e-40 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT2G38970 153 / 1e-39 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 121 / 6e-29 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 111 / 2e-25 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 102 / 8e-23 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G65683 86 / 2e-17 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G13490 45 / 3e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000900 [exp] 841 / 0 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.009G010350 [exp] 160 / 8e-42 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 152 / 4e-39 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 145 / 5e-37 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 142 / 9e-36 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 136 / 5e-34 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 110 / 3e-25 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.011G150800 [exp] 43 / 0.0001 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.007G086300 [exp] 42 / 0.0002 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023527 [exp] 157 / 5e-41 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 155 / 2e-40 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 154 / 1e-39 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 154 / 1e-39 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 151 / 7e-39 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 122 / 5e-29 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 92 / 3e-20 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 86 / 2e-17 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039634 [exp] 83 / 8e-17 AT2G22680 268 / 8e-83 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 73 / 7e-14 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.016G001300.1 pacid=42810364 polypeptide=Potri.016G001300.1.p locus=Potri.016G001300 ID=Potri.016G001300.1.v4.1 annot-version=v4.1 ATGGGAGTAGGAGCAGCGTCATCCAAGCTGAAAAGGGCTGCTAAGAAAATGGTGGTGGCTGCATGCGCCTCCTTCTCCTCCAGAGAGCCAGCTGCTCCTG CGGATCCCTCTGTTTCCATTTATACCACCTCCATCAATATCTCGGATTCTAATCTAGCAATGTTTCCCACAAGGACAAAGAATAGCTTCTTAGGGGAAGG GGAAGATGATGATGAAGAAGAAGAAGAATCCAACACCATCATTAGCAATACAAAAAACAACAACGTGGCTTCTAAGAACTTGTGCGCAATATGTCTTGAT CCCCTAAGTTATAGCACAGGCAACAGCCCGGGGCAGGCCATATTCACAGCGCAGTGCTCTCATGCGTTCCACTTTGCCTGCATCTCATCCAATGTCCGCC ATGGTAGTGTCACCTGCCCCATCTGCCGTGCTCATTGGACGCAGCTCCCCCGCAACCTAAATATCCCTTGTTCCCTTTCCTGCAACCACGCCGATCCCAT TTTCCAAATCCTAGATGATTCCATTGCAAACTTCCGCGTCCATAGACGTTCTTTCCTACGCTCTGCCCGTTATGATGACGATGACCCCATAGAACCTGAT CAGACTCCTAATCATCCCCGTCTAGACTTCTCTCTAGTGCCAATCCCATTGACAATCTTTCATCATCCTCGCACACAACATTACCAGCATCACTACAACT TAACAAGCTCATCATTGCTTTCACACCCACCAGCTTCTTATGCATGCACCTCCTCATCAAATAGGAGAACAACTGCTGCCTATCTCTCAGTAAGGTTGGC AAATCAACGACCAACGGATATGGTTCTGGTTGCAAGCCCCAATGGACCACATCTGAGGCTTCTCAAGCAATCGATGGCATTAGTGGTTTTCTCTCTCCGA CCCATTGATCGTTTGGCTATTGTGACTTACTCTTCAGCTGCAGCCCGTGTCTTCCCCCTTAGACGCATGACATCCTATGGTAAGCGAACAGCCTTACAGG TCATTGACCGCCTTTTCTATATGGGGCAAGCAGACCCGATTGAAGGTCTCAAAAAAGGGATAAAAATTCTCGAGGATCGTGCACACAAGAATCCACAGTC TACTATCTTACATCTCTCTGATAGTCCAACGAGATCGTACAATGCTATCAATTTGCAAGTTCCTATTCCCATCCATCGGTTTCACGTGGGATTTGGCTTT GGCACTTCAAATGGGTTCGTCATGCATGAATTTGAAGAGTTCTTGGCCAGACTGCTTGGAGGTGTGATTAGAGATGTCCAATTGAGGATAGGGGATGAAG CCAGGATCATAAGGCTTGGAGAGCTACGGGGCGGCGAAGAAAGGAGAATTGTCTTGGAAGTGGGCGAGTCGGGATATGTTTGTGTAGGATATAGCTACAT TGATGGCGGAGTTGAGGAATTCAACAGAGCAGGAGAAACTGCGGTGGCTCTAGGGGATAAAAGGGAAGCAAATGAAGATGACAGGGAAGCTGTAGTAGGG AGGGACTCCAGCAGTATACTTGGTGGAAGGAGTAGTAGTGTTGAGAGTTGGGATTACCATGATCCTTACATGGCTAGAAGATGGGCAAAGCATTTGCATG GCTATAGGATTTGA
AA sequence Show only first row Show all	>Potri.016G001300.1 pacid=42810364 polypeptide=Potri.016G001300.1.p locus=Potri.016G001300 ID=Potri.016G001300.1.v4.1 annot-version=v4.1 MGVGAASSKLKRAAKKMVVAACASFSSREPAAPADPSVSIYTTSINISDSNLAMFPTRTKNSFLGEGEDDDEEEEESNTIISNTKNNNVASKNLCAICLD PLSYSTGNSPGQAIFTAQCSHAFHFACISSNVRHGSVTCPICRAHWTQLPRNLNIPCSLSCNHADPIFQILDDSIANFRVHRRSFLRSARYDDDDPIEPD QTPNHPRLDFSLVPIPLTIFHHPRTQHYQHHYNLTSSSLLSHPPASYACTSSSNRRTTAAYLSVRLANQRPTDMVLVASPNGPHLRLLKQSMALVVFSLR PIDRLAIVTYSSAAARVFPLRRMTSYGKRTALQVIDRLFYMGQADPIEGLKKGIKILEDRAHKNPQSTILHLSDSPTRSYNAINLQVPIPIHRFHVGFGF GTSNGFVMHEFEEFLARLLGGVIRDVQLRIGDEARIIRLGELRGGEERRIVLEVGESGYVCVGYSYIDGGVEEFNRAGETAVALGDKREANEDDREAVVG RDSSSILGGRSSSVESWDYHDPYMARRWAKHLHGYRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	0	1
AT3G11590			unknown protein		Potri.016G074300 [exp]	1.41	0.9366
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	2.44	0.9234
AT5G03110			unknown protein		Potri.016G086900 [exp]	2.44	0.9146
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.003G107600 [exp]	5.47	0.9220
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	6.92	0.9085
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	7.93	0.9025
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	8.94	0.9172
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	11.22	0.8909
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.011G068800 [exp]	11.61	0.8904
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.016G074200 [exp]	14.14	0.8626

Compare expression of checked genes

Potri.016G001300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.