Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64810 535 / 0 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G57930 313 / 4e-103 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G61930 290 / 1e-94 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 198 / 1e-59 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106400 [exp] 337 / 7e-112 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.006G183900 [exp] 334 / 7e-111 AT5G57930 517 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.015G106200 [exp] 300 / 6e-98 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 205 / 2e-62 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038736 [exp] 573 / 0 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 563 / 0 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10019959 [exp] 308 / 1e-100 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 290 / 3e-94 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 270 / 8e-87 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 268 / 4e-86 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 275 / 2e-84 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10039659 [exp] 215 / 4e-66 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10041934 [exp] 139 / 9e-40 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10027182 [exp] 117 / 1e-29 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [poplar] [flax] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.016G001400.8 pacid=42809702 polypeptide=Potri.016G001400.8.p locus=Potri.016G001400 ID=Potri.016G001400.8.v4.1 annot-version=v4.1 ATGGAATCCATCTTACAAGGTATTTGCCCGTGTGTGTGTGCCGTGGTGTGTAAAACACCTCAAATTTCAGCTCCAAGTTCAGATAATCTTAGGTTGAAGT TGCAGTTTGGCCTTGAAAGGCTTAAGAAAAGGGAGCTGACAATTTCTGAGACTATCTTCTGTGCCAGCCAGAGACCCAGACAAAATCCCTCCATCAGGAA AGAAAAACCAATTCCTCAAAATGTGGATTTTCCACCCATACTGCCTAAGAAAAAAAAGAAACCCTTTCCCATTCCATTCAAGAAGATCCAGAAGGCTGCC AGGGAGGATAAAAAACTTGCACAAATGGGCATTGAAAAGCCCCTTGAACCGCCGAAAAATGGCCTACTTGTCCCAGACCTGATTCCTCTTGCATATGAGG TACTGGATGCCTGGAAAGTTTTGATTAAAGGTGTTGCACAGCTCTTGCACACTATTCCTGTATATGGTTGCAGTGAATGCTCAGAAGTTCACGTGGCCCT GGAAGGTCACCAAATTAAGGACTGTCTAGGTCCAACCAGTAGGGACCGTCACAGCCTCCATTCATGGGTCAGGGGTTCAATCGATGACATACTAGTACCT ATTGAGTCTTACCATCTCTATGACCCTTTTGGTAGGCGAATCAAGCACGAAACTCGGTTTGAGTATGACAGGATTCCAGCTGTTGTAGAACTCTGCATCC AAGCTGGTGTGGACATACCAGAGTATCCTTCACGCAGAAGAATGAAACCAATCAGAATGATCGGTAAGAAAGTGATCGATAGAGGTGGATTCCTTGAGGA GCCTAAGCCTTGGCGTCTAGGAAATCCATCTAGTCCTGTGGATTTTGATACTTACAGGGCCAATGAACGATTTCCACCTCCTTTATCAGAAGATATACCA AGGATCGCACAGGAGACTATGGATGCATATGATTTTGTCAGATCAGGTGTGATGAAGTTAATGAAGAAATACACGGTGAAGGCATGTGGGTATTGCTCTG AGGTTCACGTGGGACCTTGGGGTCACAATGCTAAATTTTGTGGCGCATTCAAGCATCAATGGAGGGATGGAAAGCATGGTTGGCAAGACGCAATTGTTGA CGAAGTTTTCCCTCCGAATTGCGTGTGGCATGTTAGAGATCCAAGAGGGCCTCCATTGAGGAGTGCACTGAAGAGGTTTTATGGCAAGGCTCCAGCTGTG GTTGAGGTGTGCATGCAAGCAGGTGCACAAGTCCCAGACCGATACAAGCCCATGATGAGGCTTGATATTATAGTTCCTGAAAGCGACGAGGCGAAATTAG TTGCATGA
AA sequence Show only first row Show all	>Potri.016G001400.8 pacid=42809702 polypeptide=Potri.016G001400.8.p locus=Potri.016G001400 ID=Potri.016G001400.8.v4.1 annot-version=v4.1 MESILQGICPCVCAVVCKTPQISAPSSDNLRLKLQFGLERLKKRELTISETIFCASQRPRQNPSIRKEKPIPQNVDFPPILPKKKKKPFPIPFKKIQKAA REDKKLAQMGIEKPLEPPKNGLLVPDLIPLAYEVLDAWKVLIKGVAQLLHTIPVYGCSECSEVHVALEGHQIKDCLGPTSRDRHSLHSWVRGSIDDILVP IESYHLYDPFGRRIKHETRFEYDRIPAVVELCIQAGVDIPEYPSRRRMKPIRMIGKKVIDRGGFLEEPKPWRLGNPSSPVDFDTYRANERFPPPLSEDIP RIAQETMDAYDFVRSGVMKLMKKYTVKACGYCSEVHVGPWGHNAKFCGAFKHQWRDGKHGWQDAIVDEVFPPNCVWHVRDPRGPPLRSALKRFYGKAPAV VEVCMQAGAQVPDRYKPMMRLDIIVPESDEAKLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.016G001400 [exp]	0	1
AT4G19390			Uncharacterised protein family...		Potri.004G234600 [exp]	3.00	0.9496
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	3.87	0.9524
AT2G20920			Protein of unknown function (D...		Potri.009G137600 [exp]	5.19	0.9597
AT5G59610			Chaperone DnaJ-domain superfam...		Potri.001G072700 [exp]	5.91	0.9501
AT5G55210			unknown protein		Potri.001G356400 [exp]	8.24	0.9440
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	8.83	0.9508
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	10.19	0.9581	APG2.1
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Potri.006G044700 [exp]	10.39	0.9539
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	11.35	0.9331
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	13.52	0.9561	Pt-RFC3.1

Compare expression of checked genes

Potri.016G001400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.