Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47780 885 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 645 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 572 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 482 / 1e-164 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT1G18580 476 / 6e-162 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 457 / 2e-154 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G30575 458 / 4e-154 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT2G20810 453 / 3e-153 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G06780 447 / 4e-150 GAUT6 galacturonosyltransferase 6 (.1.2) AT3G02350 426 / 3e-142 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001100 [exp] 913 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 647 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 645 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 582 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.005G218900 [exp] 513 / 2e-175 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.015G060800 [exp] 468 / 4e-159 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.019G108900 [exp] 465 / 1e-157 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 463 / 6e-157 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.017G106800 [exp] 457 / 2e-154 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038739 [exp] 933 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10039119 [exp] 718 / 0 AT5G47780 691 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 655 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 655 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 650 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 584 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 553 / 2e-177 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018554 [exp] 492 / 2e-168 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10007979 [exp] 484 / 5e-165 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 483 / 1e-164 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G001700.3 pacid=42809422 polypeptide=Potri.016G001700.3.p locus=Potri.016G001700 ID=Potri.016G001700.3.v4.1 annot-version=v4.1 ATGAATGCAGTTTCTTTCTCTCATACATCCACAACAAAAGTCTTTTCTGGGATTCTCACCACGATGAGGATGAGAAATCTGGTGATTGGGTTGCTCTTCC TCACTGTCTTGTCTCCATTCTTTTATACTGATAAATTATCCTCCTCCTTTACCCCTTCTACTTCTAAACAAGAAGATGTTAATGCTTTTACTCTCCCTAC TGATACCAGACATCTCAATGTGTTGCCCCAGGAGGAATCATCTACCGTGATTAAAGAACCCATTGGGATTGTGTATACTGATCACATCAACTCCTCCTCC AATACCATTCTGACTGAAAAAGATTCGCAGTTGCCTGATGCAAGAGAACATAAATATGCTAGAGTACTATCTGCCACTGATGACGAAGGTCATTCTCAAA CCGACAATATCATCAAACAGATCATTCAGACCACTAATCAGGAAGAGGAGGAATCCCAGTCAGACAACGGAAGTGATCAGGAAAGCAAACAGAAAACTCA AGTTCAGCTTGAACAACAATCTGCTGTAAACTCGGGCGACGATGATGAGAAGGATGCTCTGTTAACTGAAACCAATAAACAGACAGATCAAACAGCTATG CCAGATGCTCGGGTGCGGCAGCTCAGAGATCAGCTTATCAAGGCAAGGGTGTACCTGTCCCTTCCGGCAACGAAGAACAATCCCCACTTTACAAGGGAGC TTCGAATGCGGGTAAAGGAAGTTCAGCGTGTACTTGTAGATGCAACTAAGGATTCTGATCTGCCAAAGAATGCCTATGCGAAATTGAATGCAATGGACCA ATTGCTGGAAAAGGGCAAGCAAATGCAGGATGACTGTGCTACTATGGTAAAGAAGCTCCGGGCAATGCTCCACTCAACAGAAGAGCAACTCCGAGTCCAT AAGAAGCAGACCATGTTCTTGACGCAATTAACTGCAAAGACGCTACCTAAAGGTTTGCACTGTCTTCCGTTGCGCCTGACAACGGAGTATTATAATTTGA ATTCTACTGAACAGCAATTTCCAAATCAAGAGAAATTGGATGACCCTTCACTTCACCATATTGCACTATTCTCGGATAATGTTTTGGCAGCAGCAGTGGT TGTGAACTCCACCATTACCAATTCTAAGCATCCTTCGAAGCTTGTTTTCCACATTGTTAGTGATAGACTCAACTATGCAGCAATGAGGATGTGGTTTCTA GTAAATCCACCCGGTGTAGCCACTATTCAGGTCCAGAACATTGAAGAATTCACATGGTTAAATTCAAGTTATAGTCCTGTTCTGAAGCAGTTGGGTTCTC GATCAATGATTGATTATTACTTCAGGGCAGCTCGTGCCAGTTCTGATTCGAATTTGAAGTACCGGAACCCAAAGTACCTGTCCATCCTGAACCATCTTCG CTTTTACCTGCCAGAGATTTTCCCAAAGCTCAACAAGGTGTTATTCTTAGATGATGATATAGTGGTGCAGAAGGATCTTACTGGCCTTTGGTCCCTTGAT TTGAAGGGTAATGTGAATGGTGCTGTAGAGACCTGTGGAGAAAACTTCCATCGTTTTGATCGATATCTCAACTTCTCAAATCCTCATATCTCAAAGAATT TTGATCCCCGTGCTTGTGGATGGGCATATGGAATGAACATCTTTGATTTGAAGGAATGGAAGAGGCAAAACATCACTGATGTATATCATACATGGCAGAA GCTGAATCATGACAGACAATTATGGAAGTTGGGGACTCTGCCACCTGGCCTCATTACTTTTTGGAAACGGACTCACCCCCTTGACCGACGTTGGCATGTT CTGGGCCTTGGCTATAATCCCAATGTGAGCCAAAGAGAAATTGAACGAGCAGCTGTTATACATTACAATGGCAACATGAAACCATGGCTTGAAATAGGCA TACCCAAGTATCGAAGCAACTGGGCAAAATATGTTGATTATGATCATGCATATTTGCGAGAGTGCAATATCAATCCATAA
AA sequence Show only first row Show all	>Potri.016G001700.3 pacid=42809422 polypeptide=Potri.016G001700.3.p locus=Potri.016G001700 ID=Potri.016G001700.3.v4.1 annot-version=v4.1 MNAVSFSHTSTTKVFSGILTTMRMRNLVIGLLFLTVLSPFFYTDKLSSSFTPSTSKQEDVNAFTLPTDTRHLNVLPQEESSTVIKEPIGIVYTDHINSSS NTILTEKDSQLPDAREHKYARVLSATDDEGHSQTDNIIKQIIQTTNQEEEESQSDNGSDQESKQKTQVQLEQQSAVNSGDDDEKDALLTETNKQTDQTAM PDARVRQLRDQLIKARVYLSLPATKNNPHFTRELRMRVKEVQRVLVDATKDSDLPKNAYAKLNAMDQLLEKGKQMQDDCATMVKKLRAMLHSTEEQLRVH KKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSTEQQFPNQEKLDDPSLHHIALFSDNVLAAAVVVNSTITNSKHPSKLVFHIVSDRLNYAAMRMWFL VNPPGVATIQVQNIEEFTWLNSSYSPVLKQLGSRSMIDYYFRAARASSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSLD LKGNVNGAVETCGENFHRFDRYLNFSNPHISKNFDPRACGWAYGMNIFDLKEWKRQNITDVYHTWQKLNHDRQLWKLGTLPPGLITFWKRTHPLDRRWHV LGLGYNPNVSQREIERAAVIHYNGNMKPWLEIGIPKYRSNWAKYVDYDHAYLRECNINP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Potri.016G001700 [exp]	0	1
AT3G07210			unknown protein		Potri.002G245700 [exp]	13.85	0.8022
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.001G162700 [exp]	16.88	0.7815
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	29.86	0.8049
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.001G296800 [exp]	31.38	0.7268
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Potri.010G038300 [exp]	34.64	0.7588
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.005G163900 [exp]	34.85	0.8032
AT5G67200			Leucine-rich repeat protein ki...		Potri.005G141200 [exp]	51.26	0.7924
AT1G45688			unknown protein		Potri.002G124600 [exp]	52.41	0.7560
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	53.88	0.7773
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	55.00	0.7399

Compare expression of checked genes

Potri.016G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.