Plant FIBer expression Database

Potri.016G001950 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24000 40 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G001200
[exp]
47 / 8e-07 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G001950.1 pacid=42810623 polypeptide=Potri.016G001950.1.p locus=Potri.016G001950 ID=Potri.016G001950.1.v4.1 annot-version=v4.1
ATGCAGCCTTTATCTCAGATTGGGAAGCATTTTGGTCGACACAGAGGATTTCGTAGTGTATTTTCTGATGACTTTGTTTTAATTGAATGTGGAGGACCGA
CAGTGGCTGTGGATGAGGTAACTGAGAGATCCATGATATATGGGAGCAAATTAGTGATAAGGTCAAGGAAATTGGTTGTCCCAGAGAGTAGCCATGTGCT
TTCGTTTATGGACCAGCAGGAGAGGGAAGCAAAGTTGCAATACCGTAGCGAGAAGCTTGCTCTAGCTTTTGCACTTCTCAACGCACCTCCTGGTCCACCA
TCCTCATCAACAAGAACATCAGAGTTTGTGGTGATTTTCATTCAGCATTCAAGTTTGTGTCTAAGATGGTGGAGAAAATCATGA
AA sequence
>Potri.016G001950.1 pacid=42810623 polypeptide=Potri.016G001950.1.p locus=Potri.016G001950 ID=Potri.016G001950.1.v4.1 annot-version=v4.1
MQPLSQIGKHFGRHRGFRSVFSDDFVLIECGGPTVAVDEVTERSMIYGSKLVIRSRKLVVPESSHVLSFMDQQEREAKLQYRSEKLALAFALLNAPPGPP
SSSTRTSEFVVIFIQHSSLCLRWWRKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G09950 Tetratricopeptide repeat (TPR)... Potri.016G001950
[exp]
0 1
AT3G50150 Plant protein of unknown funct... Potri.016G040100
[exp]
8.66 0.8561
AT4G02630 Protein kinase superfamily pro... Potri.005G139500
[exp]
15.62 0.8467
AT5G52800 DNA primases (.1.2.3) Potri.017G148000
[exp]
24.55 0.8394
AT5G13870 EXGT-A4, XTH5, ... endoxyloglucan transferase A4,... Potri.003G159700
[exp]
32.03 0.8095 EXGT.2
AT5G22930 Protein of unknown function (D... Potri.010G229200
[exp]
47.69 0.8028
Potri.001G389650
[exp]
52.64 0.8132
AT4G14770 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000
[exp]
70.99 0.8101
AT3G23730 XTH16 xyloglucan endotransglucosylas... Potri.002G236200
[exp]
81.63 0.7951 Pt-XTR7.2
AT3G07330 ATCSLC6, ATCSLC... CELLULOSE-SYNTHASE LIKE C6, Ce... Potri.014G190701
[exp]
86.31 0.8099
AT3G54650 FBL17 RNI-like superfamily protein (... Potri.005G218400
[exp]
86.52 0.8015

Potri.016G001950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.