Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13300 714 / 0 VCS VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13290 673 / 0 VCR varicose-related (.1) AT3G60240 54 / 8e-07 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001400 [exp] 1138 / 0 AT3G13290 1170 / 0.0 varicose-related (.1) Potri.001G469500 [exp] 682 / 0 AT3G13300 1236 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G166400 [exp] 657 / 0 AT3G13300 1203 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G052600 [exp] 155 / 2e-37 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 133 / 8e-31 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039116 [exp] 849 / 0 AT3G13290 1233 / 0.0 varicose-related (.1) Lus10038742 [exp] 719 / 0 AT3G13300 733 / 0.0 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038767 [exp] 658 / 0 AT3G13300 528 / 3e-175 VARICOSE, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039096 [exp] 203 / 2e-57 AT3G13290 131 / 2e-33 varicose-related (.1) Lus10028156 [exp] 62 / 6e-09 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF16529 [poplar] [flax] Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein
Representative CDS sequence Show only first row Show all	>Potri.016G002100.4 pacid=42810569 polypeptide=Potri.016G002100.4.p locus=Potri.016G002100 ID=Potri.016G002100.4.v4.1 annot-version=v4.1 ATGGCTTCACCTGGCAATCCAAATCAACAACAACAAGGAGGTGGGGGAATAATAGGGGGAGGAGGAGGTTTTGATCTGAATAAACTGTTCAAGCCCTCTT CTTCAAATCCTATGAATATGATGCAGCCCCATATCCAACAACAACAGCAGCAGCAGCAAGGTCCTCCTCCATCTCCCAATAGTAACACTACCACAAGTGG CAATCTCACTACCTCTCCTTCCTTCCCTCTCCCTTCCTCTTCTCCACCTTATCTAACTCCATCTTCTTCTTATCCACCTCCTACTGGCCCTTACCACCCT TTTCACCACCCTCACTATCTCTCCCCTTACCCGCCTCCACCTCCTCCTCAGCAACTTCACAATCAGTTCCTCACAAATACTAACATCCATCTCCAAAATA GACCACAACCCATCTCTTCCTTTGCACCCTCTCCTCCTCCACTCTCACCTAATAATTCAGGTGGTGCTGTTTTGATGGACATCTTGACCAATCAAAACCA ACAGCAGCCTCCGCAATCCACTAATCTTAGTGGACCTTTCCCTTCTTCCACTCCCTCAACTGCATTCATCACCACCAGTCCTCCTGTCCCATCTGCCCCT CCTGTTAGTTTAGCATCTCCAACGCAGCAATGCTGTGCTCCCCCTGCGAGGATGCTCAGTACCAAGCTCCCTAAGGGTCGACACTTGAATGGCAACCATG TCGTGTATGATATTGATGTGAGATTGCAAGGTGAGGTGCAACCTCAACTTGAAGTCACACCCATCACCAAATATTTATCCGATCCTGGCCTTGTTCTCGG CCGTCAGATTGCTGTTAATAGAAATTACATTTGCTATGGACTCAAGCCTGGTGCTATTCGTATCCTCAATATTAATACTGCTTTGAGATCATTGCTTCGG GGACATAACCAGAAAGTAACAGACATGGCTTTCTTTGCTGAGGATGTTCACCTTCTGGCCAGCGCATGTGTTGATGGGCGTGTTTTCATAAGGAAGATCA ATGAGGGCTCAGACGAGGAAGAAAAACCTCAAATTTTTGAAAGGATACTCCTTGCCCTTCACATAATAGCAGATGGAGAATCATTCCACCCACGAGTGTG CTGGCATCCACACAAGCAGGAAATTTTGATTGTTGCAATTGGAAATCTCATCTTGAAAATTGATACCATTAAGATTGGAAAAGGTGGAGCATTTTCAGTG GAGCAACCTCTTACTTGTCCCATTGATAAGTTGATTGATGGGGTCCAGCTTGTTGGTAAACATGATGGGGAAGTCACTGAGTTGTCCATGTGTCAATGGA TGACCACCCGTTTAGCTTCAGCTTCAACAGATGGCGTGGTCAAGATTTGGGAAGACCGTAAGGCAGTACCCCTTGCAGTATTCAGACCACATGATGGTAA TCCTGTAAATTCTGTGGCATTCCTGACCGCCCCTGACCGCCCTGATCATATTGTTCTTATCACTGGGGGGCCCCTCAATCAGGAAGTGAAGATATGGGCC TCCGCTAGTGAAGAGGGCTGGTTATTGCCTAGTGATGCTGAATCATGGCAGTGCACTCAGACCTTGACCTTAAAGAGTTCGGCTGAATCTAGTGCTGAGG ATGCATTTTTTAATCAAGTTGTAGCCCTACCCCGAGCCAGCCTGTTTCTTCTTGCAAATGCCAAGAAGAATGCCATATATGCTGTACACCTAGAATATGG GCCATATCCAGCTGCAACCCAAATGGATTACATAGCTGAGTTTACAGTTACAATGCCTATTTTGAGTCTTACTGGAACCAGTGATTGTTTACCAAATGGA GAAAATATTGTTCAGGTTTACTGTGTCCAAACACAGGCTATTCAGCAATATGCATTGAACTTATCACAATGCCTTCCACCACCTCTGGAGAACATGGTGT TGGAGAAAACAGAATCTAATGTTTCTCGTGCTTTTGATACTGCTAATTCTGATGGTTCTGCTATTATGGAATCATCTCATGGAAGTAAACCCATTGAGAT ATCCACAGGTAACATGACTTCCATACCACCAATGACTCCTAGCAGTTCTGAAAGTGCTCCTGTAGCAAGAGAAAGCTTGGGTTCTTCTGATGTTGGTAGC TCGCTAGATATTGCTTCTTCCGGTGGGCAAACCAAGGCTATTACTATTTCATCACGTAATAATACTGACAATACTAACACTGTGTCACCCCATCTACTGT TAATTCCAAAGTTGTCTCGGTCGTTGTCAGGACTCCAGAGTCCAGCAAATATCACAGATCCCAATGTGCAACTCAGTGGTCATGCTGGTGACCAGCCTGT TTCAGATCATTCAGTTGACCGAAGAATTGAAACTGTGAAAGAAAATGTTACTGATACCTCCACTGGTGATAATTTGAATAAGGGTGAGAAGAACATCGAA CAAACTGGTATTGCAATGGTCTCTGAACCTCCAGTAATGTTTAAACACCCAACCCATCTTATAACTCCATCGGAGATATTATCCAGGGGTGCTGCTTCTG AGAATTCTCAAACTACTCAGGGTCTGAATGTTGGAGAGGCAAAGATTCAGGATGTGCTTGTGAACAATGATACTGAAAATGTTGAAGTAGAGGTTAAAGT TGTTGAAGAAACCCCCGGCAGTGGAACAGTCCCAGTATCTAGTTCCAAAGAAAAACCTGATAGGCTGACTATATCAAAGAGTACCTCTAGTAGATTGAAG AAGAAGAGAGAAGAATTTCTTCTGAAAGCAGATCTTGCTGGGACTACTTATCTTCATGGGGCATATAAAGGCCCCGAGGAAAAGAAAGAAAATGTCATAT CTTCAGAAGTCACAGAAAGCACCAGCCCTATTCTGAAACAGACACCTGCTGATGCCTTGCAGGTTGACTCTGTAGCAAGCGAGAAAAATAAAGGCGAGCC AGATGATTGGGAAGATGCTGCTGACATGTCTATACTGAAACTGGATGGTGATGGGGAACTATCACGTGGAGAGTCAGGAGCCAATCAAAATAATGACTTT GACTTGCCCATAGAATCTCATACACCTGTTGCTGAGAAGAAGGAAAAACCCTTCTACTCTCAGGCCTCGGATCTTGGCATTCAGATGGCTAGAGATTGTC ATGTGGAAGCTTATAGTGTTGGGGCAATCCGACAAGCTAATGAAGGTAGCATTACTGAGGTACTTGATAGAAATCCTAGTGGTGTAGATGAGGAGCAACA TATAACTGAAGATGTTCGTGCAAAAAGTGGTGAAGCAGAAACATCTGTGGCAGTCCTGCAGTCCCCAGCCCCAGCCCCAGCAACTAAAGGAAAAAAACAG AAGGGGAAAAGTTCTCAAGTATCTGTTCCATCTTCCCCTTCCCCGAGTCCATTCAACTCAACTGGTTCGTCCAATGAACCAGGTTGCACTTCTGGTGCCC AATCTAGTGATGCTGCTTTACCTCAGATATTGGCCTTGCAGGATACTCTTGATCAGTTACTGAACATGCAGAAAGAAATGCAGAAGCAGATGAATACAAT GATTTCTGTCCCAGTTTCCAAAGAAGGTAAAAGACTAGAGGCATCCTTGGGCCGGAGCATCGAGAAAATTATCAGGGCTAACACAGATGCTCTATGGGCT CGTTTTCAAGAAGAAAACACAAAACATGAGAAGTTGGAGAAGGACCGTATACAGCAGTTAACTAATTTGATCACGAATTGTATAAACAAGGATTTGCCAA CAGCTTTGGAGAAAACTTTAAAGAAGGAAATAGCTGCAATCGGACCTGCTGTTGCTCGTGCTATCACTCCCATTTTGGAGAAAAGCATATCATCAGCTAT TACAGAGTCATTCCAGCAGAAAGGGGTGGGAGAGAAGGCAGTGAATCAGTTAGAGAAGACAGTTAGTTCAAAACTTGAAGCTACAGTGGCCAGACAAATC CAATCACAGTTTCAAACATCTGGCAAGCAAGCTCTTCAGGATGCATTAAGGTCTACGCTGGAAGCTTCAATTATTCCTGCATTTGAGATGTCCTGCAAGG CCATGTTTGATCAAGTTGATGCCACATTCCAGAATGGGCTTAATAAGCATATAAATGACATTCAGCAACAGTTTAATTCCATGCATTCTCCTGTGGCCAT TGCCCTGAGGGATGCTATCAATTCAGCGTCATCACTCACCCAGACCTTAAGTGGAGAGCTGGCAGATGGTCAACGGCAGCTCTTAGCTATGGCGGCTGCA GGTGCAAACTCAAAGGTGGGAGATCCATCAACGAAGTTGGGCAATGGACCATTGCCTGGTATGCATGAGATGCCTGAGGTGCCTTTGGATCCAACAAAAG AATTGTCAAGGTTGATAGCTGAGCAGAAATATGAGGAAGCGTTCACCTTAGCTCTGCACAGAAGTGATGTCTCAATAGTTTCCTGGTTATGTTCTCAGGT TGATCTACAGGGGATATTGTCAATTTCACCACTACCTTTAAGCCAAGGAGTTCTGCTGGCCCTTCTACAGCAACTGGCATGTGATTTTAGTAATGAAACC TCTAGAAAGTTGGCATGGATGACAGATGTGGCTGCTGCCATAAACCCTACAGATCCAATGATTGCGATGCATGTAGGACCAATTTTTGATCAAGTCTATC AGATAGTGGTCCATCAAAGGAGTCTGCCCAGCACATCTGCTTCAGAAGCCTCAGGCATACGTGTTCTTCTGGTTGTCATAAATTCTGTGCTAAGGAGCTG TAAATGA
AA sequence Show only first row Show all	>Potri.016G002100.4 pacid=42810569 polypeptide=Potri.016G002100.4.p locus=Potri.016G002100 ID=Potri.016G002100.4.v4.1 annot-version=v4.1 MASPGNPNQQQQGGGGIIGGGGGFDLNKLFKPSSSNPMNMMQPHIQQQQQQQQGPPPSPNSNTTTSGNLTTSPSFPLPSSSPPYLTPSSSYPPPTGPYHP FHHPHYLSPYPPPPPPQQLHNQFLTNTNIHLQNRPQPISSFAPSPPPLSPNNSGGAVLMDILTNQNQQQPPQSTNLSGPFPSSTPSTAFITTSPPVPSAP PVSLASPTQQCCAPPARMLSTKLPKGRHLNGNHVVYDIDVRLQGEVQPQLEVTPITKYLSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLR GHNQKVTDMAFFAEDVHLLASACVDGRVFIRKINEGSDEEEKPQIFERILLALHIIADGESFHPRVCWHPHKQEILIVAIGNLILKIDTIKIGKGGAFSV EQPLTCPIDKLIDGVQLVGKHDGEVTELSMCQWMTTRLASASTDGVVKIWEDRKAVPLAVFRPHDGNPVNSVAFLTAPDRPDHIVLITGGPLNQEVKIWA SASEEGWLLPSDAESWQCTQTLTLKSSAESSAEDAFFNQVVALPRASLFLLANAKKNAIYAVHLEYGPYPAATQMDYIAEFTVTMPILSLTGTSDCLPNG ENIVQVYCVQTQAIQQYALNLSQCLPPPLENMVLEKTESNVSRAFDTANSDGSAIMESSHGSKPIEISTGNMTSIPPMTPSSSESAPVARESLGSSDVGS SLDIASSGGQTKAITISSRNNTDNTNTVSPHLLLIPKLSRSLSGLQSPANITDPNVQLSGHAGDQPVSDHSVDRRIETVKENVTDTSTGDNLNKGEKNIE QTGIAMVSEPPVMFKHPTHLITPSEILSRGAASENSQTTQGLNVGEAKIQDVLVNNDTENVEVEVKVVEETPGSGTVPVSSSKEKPDRLTISKSTSSRLK KKREEFLLKADLAGTTYLHGAYKGPEEKKENVISSEVTESTSPILKQTPADALQVDSVASEKNKGEPDDWEDAADMSILKLDGDGELSRGESGANQNNDF DLPIESHTPVAEKKEKPFYSQASDLGIQMARDCHVEAYSVGAIRQANEGSITEVLDRNPSGVDEEQHITEDVRAKSGEAETSVAVLQSPAPAPATKGKKQ KGKSSQVSVPSSPSPSPFNSTGSSNEPGCTSGAQSSDAALPQILALQDTLDQLLNMQKEMQKQMNTMISVPVSKEGKRLEASLGRSIEKIIRANTDALWA RFQEENTKHEKLEKDRIQQLTNLITNCINKDLPTALEKTLKKEIAAIGPAVARAITPILEKSISSAITESFQQKGVGEKAVNQLEKTVSSKLEATVARQI QSQFQTSGKQALQDALRSTLEASIIPAFEMSCKAMFDQVDATFQNGLNKHINDIQQQFNSMHSPVAIALRDAINSASSLTQTLSGELADGQRQLLAMAAA GANSKVGDPSTKLGNGPLPGMHEMPEVPLDPTKELSRLIAEQKYEEAFTLALHRSDVSIVSWLCSQVDLQGILSISPLPLSQGVLLALLQQLACDFSNET SRKLAWMTDVAAAINPTDPMIAMHVGPIFDQVYQIVVHQRSLPSTSASEASGIRVLLVVINSVLRSCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.016G002100 [exp]	0	1
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	8.00	0.8394
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	9.32	0.7732	Pt-UBP12.2
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	10.24	0.8317
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	12.56	0.8332	TTN8.2
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	13.49	0.8110
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	14.28	0.8118
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	17.88	0.7952
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.014G000500 [exp]	21.97	0.7868	Pt-HAC1.3
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	25.09	0.8267	CPC902,TTN8.3
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	26.60	0.7995

Compare expression of checked genes

Potri.016G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.