Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47810 642 / 0 PFK2 phosphofructokinase 2 (.1) AT4G32840 467 / 2e-162 PFK6 phosphofructokinase 6 (.1) AT4G26270 462 / 3e-160 PFK3 phosphofructokinase 3 (.1) AT5G56630 459 / 4e-159 PFK7 phosphofructokinase 7 (.1) AT4G29220 457 / 2e-158 PFK1 phosphofructokinase 1 (.1) AT5G61580 450 / 9e-155 PFK4 phosphofructokinase 4 (.1.2) AT2G22480 367 / 3e-122 PFK5 phosphofructokinase 5 (.1) AT1G12000 75 / 3e-14 Phosphofructokinase family protein (.1) AT4G04040 72 / 4e-13 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G20950 68 / 6e-12 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152600 [exp] 462 / 2e-159 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 461 / 2e-159 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 457 / 4e-158 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.007G010300 [exp] 347 / 2e-114 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235132 [exp] 239 / 2e-76 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.006G235066 [exp] 203 / 1e-62 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 124 / 4e-33 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.004G003800 [exp] 70 / 1e-12 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1) Potri.001G079450 [exp] 63 / 1e-12 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008812 [exp] 691 / 0 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10005488 [exp] 470 / 8e-163 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 460 / 6e-160 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 463 / 1e-159 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 463 / 7e-158 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 457 / 1e-157 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10012738 [exp] 356 / 8e-118 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10002648 [exp] 355 / 1e-117 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 223 / 3e-71 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10039992 [exp] 89 / 7e-22 AT5G47810 89 / 6e-23 phosphofructokinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.016G002700.2 pacid=42810003 polypeptide=Potri.016G002700.2.p locus=Potri.016G002700 ID=Potri.016G002700.2.v4.1 annot-version=v4.1 ATGGCCCTTTCATCACCAGAAGCCACCAATCTAAACACTGCAAAAATCCCAGAAAACCCCTCCTCCCCATGCTCCATACACCTCCAAAAACTGCCTCACT TAACAGACTATCTTCCAAACCTTAAACCACTACCAAACCCTTTGGAGAAGAATACTTTATATCACCCACCAGCAGGCTTTTACATCAATCAATCTGAAGT AGTCCTTGGCAAGATCATCGTAGACTTGTCTGCTGACAGTGAAGCTGTGAGTTCCCACTCACCCCAAGTGGCTTACAACAGAGCTGGTCCGCGCTGGCAA GTCTTTTTTGAGCCAAAAGATATCAAAGCTGCCATTGTTACATGTGGGGGACTGTGTCCTGGCATGAATACAGTGATCAGGGAACTTGTTGTTGGGCTGT GGGAGATGTATGGAGTGCGTCAGATTTATGGGGTGACAGCTGGTTATAGAGGGTTTTATTCTAGAGACCCTATTGAGCTTAATCCAAAGCTGGTGCATAA TTGGCACAAATTGGGTGGTACAGCTCTTGAGACCTCCAGAGGTGGTTTTGATCTTAATAAAATTGTGGATGCCATTGAACATCACGGTTTTAATCAGGTG TATATAATTGGAGGAGATGGAACAATGCGTGGAGCTGTGAACATATTCAATGAAATTCAACGTCGAAAACTAAATATTGCAGTTGCTGGAATTCCCAAAA CAGTTGACAATGATATTGGCATCATTGATAGATCATTTGGATTTCAGACAGCAGTCGAGATGGCCCAGCAAGCAATCAATGCAGCTCATATTGAGGCTGA GAGTGCAGTTAATGGTATTGGCCTGGTGAAGTTAATGGGTCGAAGCACAGGTCACATAGCCCTCCATGCCACATTGAGCAGCCGTGATGTGGATTGCTGT TTAATTCCTGAAATCGATTTTTACTTGGAAGGAGAAGGAGGATTGTTGGAGTTTCTGGAGAAACGACTGAAAGAGAACGGACATGCAGTCCTAGTTGTTG CCGAGGGAGCTGGGCAGGATATGATACCAAGAACAGAGGCCCAAAAAGAAGAGAGGGATGAGTCCGGCAACCTAGTGTTCTTAGACTTTGGTGCGTGGTT AAAGTCAGAGCTTAAGAACTGGTGGACAAGAGACCATGCAAACGAGTTGTTCACAGTGAAGTACATAGATCCCACGTACATGATCAGGGCAGTGCCTGCA AATGCTACAGATAACTTGTATTGCACTCTTGTAGCATACTCGGCAATTCACGGTGTAATGGCAGGATACACTGGATTTGTCTCTGGTCTTATCAATGGAA ATTATGCATATATCCCAGTGGAAGAGGTTGCTCATGCTAGGAATGAAGTTAACACAAAAGACCATAAATGGGCATGGGTGAGATCTGTTACCAATCAGCC TGATTTTGTCAAGCCCTAA
AA sequence Show only first row Show all	>Potri.016G002700.2 pacid=42810003 polypeptide=Potri.016G002700.2.p locus=Potri.016G002700 ID=Potri.016G002700.2.v4.1 annot-version=v4.1 MALSSPEATNLNTAKIPENPSSPCSIHLQKLPHLTDYLPNLKPLPNPLEKNTLYHPPAGFYINQSEVVLGKIIVDLSADSEAVSSHSPQVAYNRAGPRWQ VFFEPKDIKAAIVTCGGLCPGMNTVIRELVVGLWEMYGVRQIYGVTAGYRGFYSRDPIELNPKLVHNWHKLGGTALETSRGGFDLNKIVDAIEHHGFNQV YIIGGDGTMRGAVNIFNEIQRRKLNIAVAGIPKTVDNDIGIIDRSFGFQTAVEMAQQAINAAHIEAESAVNGIGLVKLMGRSTGHIALHATLSSRDVDCC LIPEIDFYLEGEGGLLEFLEKRLKENGHAVLVVAEGAGQDMIPRTEAQKEERDESGNLVFLDFGAWLKSELKNWWTRDHANELFTVKYIDPTYMIRAVPA NATDNLYCTLVAYSAIHGVMAGYTGFVSGLINGNYAYIPVEEVAHARNEVNTKDHKWAWVRSVTNQPDFVKP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Potri.016G002700 [exp]	0	1
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G010400 [exp]	4.89	0.7672
AT3G25910			Protein of unknown function (D...		Potri.018G070500 [exp]	10.95	0.7396
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	15.42	0.7114
					Potri.001G407500 [exp]	18.16	0.7463
					Potri.001G407401 [exp]	29.69	0.7061
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	29.89	0.7125
AT5G46250			RNA-binding protein (.1.2.3)		Potri.011G080700 [exp]	31.38	0.7313
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.008G096500 [exp]	35.49	0.6100
AT5G61230		PIA2, ANK6	phytochrome interacting ankyri...		Potri.003G104400 [exp]	37.52	0.7020
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	41.01	0.6395

Compare expression of checked genes

Potri.016G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.