Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17180 704 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 440 / 3e-151 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 438 / 2e-150 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 434 / 9e-149 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 431 / 1e-147 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 426 / 6e-146 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 424 / 9e-145 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 419 / 7e-143 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 399 / 2e-135 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 399 / 5e-135 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002100 [exp] 840 / 0 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 450 / 2e-155 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G076500 [exp] 449 / 9e-155 AT5G58480 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G059700 [exp] 446 / 2e-153 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G150400 [exp] 444 / 4e-153 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 444 / 2e-152 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 440 / 2e-151 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.019G032900 [exp] 440 / 3e-151 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G000900 [exp] 438 / 4e-150 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039095 [exp] 743 / 0 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 442 / 4e-152 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002633 [exp] 442 / 6e-152 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10028104 [exp] 441 / 8e-152 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10020261 [exp] 434 / 7e-149 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031098 [exp] 433 / 3e-148 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10001183 [exp] 430 / 5e-147 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 421 / 1e-143 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 419 / 2e-142 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10042269 [exp] 415 / 3e-141 AT5G58480 606 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.016G002800.5 pacid=42809594 polypeptide=Potri.016G002800.5.p locus=Potri.016G002800 ID=Potri.016G002800.5.v4.1 annot-version=v4.1 ATGTCAAGATTGTCAGGAACTCTGCTTTGTCTTGTGCTAGCAATCATACTACTATCAGGGTCATTTCCAGTGGGAGAATCAGCAATAGGAGTCAACTGGG GGACAATCTCATTTCACAGGTTGAAGCCCTCAACTGTGGTGGATCTGTTGAAAGACAACAAGATAAAGAGAGTGAAGTTGTTCGATGCAGACCCAGGTTC GCTTACTGCTTTAATGGGGAGTGGGATTGAAGTCATGGTTGGGATTCCTAATGAGATGTTGGCTGCTCTTAGCTCTTCAACTGATGCTTCTGATTTGTGG GTTAGGCAAAATGTGTCTAGATATGTTGTTAAAGGTGGTGCTGATATAAGGTACGTTGCTGTAGGAAATGAACCATTCCTCACAAGTTATTCAGGTCAAT TTCAATCTTTTGTTGTCCCTGCTCTGCTCAATCTACAACAGTCTCTGGTGAAAGCAAATCTAGCTGGTTATGTAAAGCTAGTAGTTCCTTGCAATGCTGA TGCTTATGAGTCTTCTCTTCCTTCTCAAGGGGCATTCCGACCTGAACTAACTCAGATTATGACTCAACTTGTGTCCTTCCTCAACTCAAACGGCTCACCT TTTGTTGTGAATATCTACCCGTTTCTTAGCCTTTATGGGAACTCAGATTTTCCACAAGACTATGCATTCTTTGAGGGGAGTACCCATCCTGTTACAGATG GGTCTAATGTCTACTACAATGCTTTTGATGGGAATTTCGACACTTTAGTTGCAGCGCTCAACAAACTTGGATATGGTCAAATGCCCATTGTTATTGGCGA GGTGGGTTGGCCAACTGATGGAGCCATTGGCGCCAACCTCACTGCAGCAAGGGTTTTCAACCAGGGACTTATAAAACATGTATTGAGTAACAAAGGAACC CCTCTGAGACCAGATGCCCCTCCCATGGATATTTATCTTTTCGCTCTGCTTGATGAAGGAGCAAAGAGTGTACTCCCAGGAAACTTTGAAAGACACTGGG GGATTTTCTCGTTTGATGGCCAGGCTAAATATGCACTGAACCTTGGTTTGGGTAACAAGTTACTGAAGAATGCAAAGAATGTCGAGTATCTCCCATCAAG GTGGTGTGTGGCAGACCCCTCAAAAGATCTAACAAGTGTAGCCAACCACCTGAGAATAGCCTGCAGTGCTGCTGATTGCACAACACTTAATTATGGCGGA TCTTGCAATGAAATTGGGGCAAAAGGAAACATCTCATATGCATTCAACAGTTACTATCAGCTCCAGATGCAAAATGCACAAAGCTGTGATTTCGATGGGC TTGGTATGGTGACATTCCTAGACCCATCAGTTGGTGATTGCAGGTTCCCTGTTGGAGTGAATGATCATAAGAGTTCATTAGCTTTCAGATCATGTCGTAG GTGGACCACCATTTGGACTTCTATCCTAGGGGGGGTGTGGTTCTTTCTAATGTTATGA
AA sequence Show only first row Show all	>Potri.016G002800.5 pacid=42809594 polypeptide=Potri.016G002800.5.p locus=Potri.016G002800 ID=Potri.016G002800.5.v4.1 annot-version=v4.1 MSRLSGTLLCLVLAIILLSGSFPVGESAIGVNWGTISFHRLKPSTVVDLLKDNKIKRVKLFDADPGSLTALMGSGIEVMVGIPNEMLAALSSSTDASDLW VRQNVSRYVVKGGADIRYVAVGNEPFLTSYSGQFQSFVVPALLNLQQSLVKANLAGYVKLVVPCNADAYESSLPSQGAFRPELTQIMTQLVSFLNSNGSP FVVNIYPFLSLYGNSDFPQDYAFFEGSTHPVTDGSNVYYNAFDGNFDTLVAALNKLGYGQMPIVIGEVGWPTDGAIGANLTAARVFNQGLIKHVLSNKGT PLRPDAPPMDIYLFALLDEGAKSVLPGNFERHWGIFSFDGQAKYALNLGLGNKLLKNAKNVEYLPSRWCVADPSKDLTSVANHLRIACSAADCTTLNYGG SCNEIGAKGNISYAFNSYYQLQMQNAQSCDFDGLGMVTFLDPSVGDCRFPVGVNDHKSSLAFRSCRRWTTIWTSILGGVWFFLML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.016G002800 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	2.44	0.6979
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Potri.013G069900 [exp]	10.00	0.6008
AT4G39860			unknown protein		Potri.005G076000 [exp]	14.07	0.6148
AT1G54460			TPX2 (targeting protein for Xk...		Potri.005G055900 [exp]	25.09	0.6068
AT1G76270			O-fucosyltransferase family pr...		Potri.009G143100 [exp]	32.83	0.6397
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	37.46	0.5934
AT3G48425			DNAse I-like superfamily prote...		Potri.015G088900 [exp]	38.26	0.6437
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.010G226600 [exp]	42.19	0.6337
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.014G159500 [exp]	43.47	0.6254	Pt-ZFN2.1
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	51.57	0.5537

Compare expression of checked genes

Potri.016G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.