Plant FIBer expression Database

Potri.016G003033 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G003033.1 pacid=42810599 polypeptide=Potri.016G003033.1.p locus=Potri.016G003033 ID=Potri.016G003033.1.v4.1 annot-version=v4.1
ATGGGGAACTACAACTCCACAACAGGCTGTGGTGCTTCTGCTTATTCTCGACTTCCTAGTACTCACTATTCTCCTGATGATGATCACTCCCTAAGGGACC
CTCTTCTACGCAATATTACACAGAAGGTGGAGGAGCAACATCAACAGCTTCTTCATCATATTTATGAAGCAACTCGTGTAAAGGAGACAGTAAAATCGGC
CACTACGTCTAGCTCTAGCTTTAACCCTAACCCTCCTCCCTCTAAGCCCATGCAGGAGGAGCAAAAGCCGAATGGTCACCATGCCCTTGAAAAGGAGCAA
AAGCCGAATGGTCACCATGCCCTTGAAAAGGAGCTTCATCAAGAGTTGATCAGGCATGGAGTTGCAAAGCCAAAAGCTTTAGCTTCATGCCCTTCATGTT
ACAAACAAGGAGAGGCCATTGAGAGACTCAAGGAGAAGAATGCTAGTCTAGAGAAGAGAGTCATGGAGTTGACAGCTACTATAGAAGAGATGAAGAGGAC
TAGTGATTCAAACATAATTAATAATAATAATATCAAGATACCTGCGGCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAACACCCCATCAGAGCAACATC
AACACTCCAATTATACCTGATGATCTTGTAAACCTGCAAACCAGTCCAGTTCCTGATAGCAGTACCAATGAAATTGAGATGAAGAATGATTCAATGATGA
GTGAACAAAGCTCCGCGACACAAGCTCTACAATCTGAGATCATCTATGGATCCCTGAATGATCTTACTGGATGCCTAGTGGTTTTGATTTTTCTAGTGGC
CGTGCTCATTGGTGTTTCACTATAA
AA sequence
>Potri.016G003033.1 pacid=42810599 polypeptide=Potri.016G003033.1.p locus=Potri.016G003033 ID=Potri.016G003033.1.v4.1 annot-version=v4.1
MGNYNSTTGCGASAYSRLPSTHYSPDDDHSLRDPLLRNITQKVEEQHQQLLHHIYEATRVKETVKSATTSSSSFNPNPPPSKPMQEEQKPNGHHALEKEQ
KPNGHHALEKELHQELIRHGVAKPKALASCPSCYKQGEAIERLKEKNASLEKRVMELTATIEEMKRTSDSNIINNNNIKIPAAGSGSGSGSGSTPHQSNI
NTPIIPDDLVNLQTSPVPDSSTNEIEMKNDSMMSEQSSATQALQSEIIYGSLNDLTGCLVVLIFLVAVLIGVSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G003033
[exp]
0 1
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.009G098400
[exp]
2.00 0.9543
AT2G16050 Cysteine/Histidine-rich C1 dom... Potri.008G055200
[exp]
2.82 0.9120
Potri.011G047200
[exp]
5.47 0.9038
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G033200
[exp]
6.00 0.9068
AT1G19250 FMO1 flavin-dependent monooxygenase... Potri.006G137600
[exp]
6.16 0.8929
AT5G37860 Heavy metal transport/detoxifi... Potri.006G079400
[exp]
6.63 0.9192
Potri.014G063350
[exp]
7.74 0.9140
AT3G62150 ABCB21, PGP21 ATP-binding cassette B21, P-gl... Potri.014G113500
[exp]
8.66 0.8861
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.016G118500
[exp]
13.96 0.9072
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Potri.007G074850
[exp]
16.73 0.8833

Potri.016G003033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.