Plant FIBer expression Database

Potri.016G003066 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G002700
[exp]
0 / 1 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G003066.2 pacid=42809025 polypeptide=Potri.016G003066.2.p locus=Potri.016G003066 ID=Potri.016G003066.2.v4.1 annot-version=v4.1
ATGGAATTTAGTCAAGAAAGCAGAGAAGATAGGCTTGGTTTTTGCATGAAATTGTGCCCTTCTCCAAAGATGACTATCCAGGATATGACAACAGGAGAGC
TCATGGAAGCCTTTCCGATGCCCCCTCTCGATTTGGGGATTGCAGTACTTACAAGTTCAAGCCCAACCAGTCATCCAAGTTCAATAGATCATCAAGTAGA
AATGCTTGAATGTTCTGTGGTGATAGATAACCGAGCAGAAGTACTGCTGATTCAAATCAAAATACTTTAG
AA sequence
>Potri.016G003066.2 pacid=42809025 polypeptide=Potri.016G003066.2.p locus=Potri.016G003066 ID=Potri.016G003066.2.v4.1 annot-version=v4.1
MEFSQESREDRLGFCMKLCPSPKMTIQDMTTGELMEAFPMPPLDLGIAVLTSSSPTSHPSSIDHQVEMLECSVVIDNRAEVLLIQIKIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G55800 Domain of unknown function (DU... Potri.016G003066
[exp]
0 1
AT4G27680 P-loop containing nucleoside t... Potri.012G025351
[exp]
10.44 0.7869
AT5G18900 2-oxoglutarate (2OG) and Fe(II... Potri.010G027201
[exp]
17.05 0.7679
AT5G37530 NAD(P)-binding Rossmann-fold s... Potri.004G083200
[exp]
19.49 0.7558
AT1G15170 MATE efflux family protein (.1... Potri.010G117000
[exp]
32.12 0.7581
Potri.002G166850
[exp]
37.29 0.7355
AT3G15110 unknown protein Potri.001G372850
[exp]
46.05 0.7254
AT3G22560 Acyl-CoA N-acyltransferases (N... Potri.007G102900
[exp]
62.40 0.7248
AT2G01620 MEE11 maternal effect embryo arrest ... Potri.008G133100
[exp]
106.91 0.6760
AT1G62280 SLAH1 SLAC1 homologue 1 (.1) Potri.010G170050
[exp]
109.77 0.6856
AT1G23550 SRO2 similar to RCD one 2 (.1) Potri.006G231600
[exp]
119.81 0.6752

Potri.016G003066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.