Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55990 420 / 1e-151 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G26570 419 / 5e-151 ATCBL3 calcineurin B-like 3 (.1.2) AT4G16350 336 / 2e-118 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G17615 280 / 1e-96 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 275 / 3e-94 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G26560 272 / 4e-93 CBL7 calcineurin B-like protein 7 (.1) AT5G24270 261 / 6e-89 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G33000 260 / 6e-88 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT1G64480 246 / 7e-83 CBL8 calcineurin B-like protein 8 (.1) AT4G01420 193 / 2e-62 CBL5 calcineurin B-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G002900 [exp] 442 / 3e-160 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.001G371700 [exp] 419 / 3e-151 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 407 / 2e-146 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.012G015100 [exp] 282 / 4e-97 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.003G084200 [exp] 280 / 2e-96 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 277 / 4e-95 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.015G013100 [exp] 273 / 2e-93 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.006G230200 [exp] 261 / 4e-88 AT4G33000 271 / 4e-92 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.015G013200 [exp] 259 / 4e-88 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038764 [exp] 402 / 1e-144 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1) Lus10039098 [exp] 400 / 5e-139 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10011028 [exp] 288 / 2e-99 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10022407 [exp] 282 / 5e-97 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 278 / 9e-96 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10001816 [exp] 251 / 4e-85 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10037648 [exp] 253 / 6e-85 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10003191 [exp] 250 / 2e-84 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10015630 [exp] 251 / 3e-84 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10023069 [exp] 239 / 4e-80 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.016G003500.5 pacid=42810482 polypeptide=Potri.016G003500.5.p locus=Potri.016G003500 ID=Potri.016G003500.5.v4.1 annot-version=v4.1 ATGGTGCAGTGCCTAGACGGATTAAAGCATTTGTGTGCTGCTATAGCAAACTGTTGTGATGCAGATTTGTATAAGCAACCCAGAGGGCTGGAAGATCCAG AAGTTCTTGCAAGGGAAACAGTGTTTAGTGTGAGTGAAATAGAAGCGCTGTATGAACTGTTTAAGAAGATCAGCAGTGCAGTGATTGATGACGGGCTGAT CAATAAGGAAGAATTTCAACTAGCATTATTCAAGACAAATAAAAAGGAAAGCCTATTCGCAGATCGGGTATTTGACTTATTTGACACAAAGCACAATGGA ATATTAGATTTTGAGGAGTTTGCACGCGCTCTCTCTGTATTTCACCCCAATGCACCAATTGATGATAAGATTGAATTTTCATTCCAACTGTATGATCTCA AACAGCAAGGGTTTATTGAGAGACAGGAGGTAAAGCAAATGGTAGTGGCTACACTTGCTGAATCTGGTATGAATCTGTCGGATGATGTAATAGAGAGCAT TATTGATAAGACATTTGAGGAGGCTGATACTAAGCATGACGGGAAGATTGATAAAGAAGAATGGCGAAGCCTTGTTTTGCGACATCCCTCTCTTTTGAAG AATATGACTCTCCAGTATCTCAAGGACATCACCACCACATTCCCAAGTTTTGTGTTTCACTCACAAGTTGATGATACCTGA
AA sequence Show only first row Show all	>Potri.016G003500.5 pacid=42810482 polypeptide=Potri.016G003500.5.p locus=Potri.016G003500 ID=Potri.016G003500.5.v4.1 annot-version=v4.1 MVQCLDGLKHLCAAIANCCDADLYKQPRGLEDPEVLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNG ILDFEEFARALSVFHPNAPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLK NMTLQYLKDITTTFPSFVFHSQVDDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.016G003500 [exp]	0	1
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	3.00	0.7539	EXP2.10
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Potri.002G136500 [exp]	19.49	0.6919	CRK.2
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	22.58	0.6540
AT3G04780			Protein of unknown function (D...		Potri.005G052100 [exp]	25.98	0.6248
AT3G08880			unknown protein		Potri.012G107200 [exp]	36.85	0.6473
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Potri.005G054700 [exp]	42.40	0.5995
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Potri.010G211000 [exp]	47.52	0.6546
AT5G12235		CLE22	CLAVATA3/ESR-RELATED 22 (.1)		Potri.016G034950 [exp]	67.08	0.5641
AT5G67130			PLC-like phosphodiesterases su...		Potri.007G045700 [exp]	68.93	0.6349
AT5G12320			ankyrin repeat family protein ...		Potri.001G276100 [exp]	70.99	0.6219

Compare expression of checked genes

Potri.016G003500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.