Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47790 431 / 3e-150 FHA SMAD/FHA domain-containing protein (.1) AT5G38840 85 / 2e-17 FHA SMAD/FHA domain-containing protein (.1) AT1G34355 54 / 1e-07 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) AT3G20550 52 / 3e-07 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003100 [exp] 691 / 0 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.004G111500 [exp] 90 / 6e-19 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.001G420400 [exp] 55 / 7e-08 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.013G114700 [exp] 54 / 3e-07 AT1G34355 299 / 5e-84 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Potri.011G136102 [exp] 46 / 2e-05 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003911 [exp] 449 / 1e-156 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 444 / 9e-155 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1) Lus10005098 [exp] 85 / 3e-17 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 76 / 1e-14 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10004278 [exp] 54 / 1e-07 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10009434 [exp] 54 / 2e-07 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10006070 [exp] 54 / 3e-07 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10019235 [exp] 45 / 6e-05 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.016G003800.5 pacid=42809726 polypeptide=Potri.016G003800.5.p locus=Potri.016G003800 ID=Potri.016G003800.5.v4.1 annot-version=v4.1 ATGTATGGTAGAGCAGGTCTTGAGCGTTTTAAAAAAGCTCAATCTACTGAACCCTTCTCAGTCCCTGTCAATTCTGCTCCCAAGACCACTACCCAACCTG CTGTTAAAACTGTTTCGCAACCCTCAGTTCAGTATTCACAATCTAAGACACAATCCCAGTTCCGAGACCAACCTTATGTTGCTCAAAAACCTGCTGCGCC GGAGGCCGGACCATTGCTAGGGCATACACAGCCGGTGACGCAGGTTGGAGGAGGGCAGTCAACTTGGCAGCCACCAGACTGGGCGATTGAGCCTCGTCCT GGAGTTTATTATCTTGAGGTTTTGAAGGACGGAGAGGTTCTTGATCGCATTAGTTTGGATAGGCGGAGGCATATCTTTGGGAGGCAAATCCACACTTGTG ATTTTGTGCTTGATCATCAGTCCGTTTCACGCCAACATGCTGCTGTCATTCCTCACAAGAATGGAAGCATTTTTGTAATTGATTTGGGGTCTGCACATGG TACTTTTGTGGCTAATGAACGTTTGACTAAAGATACCCCTGTTGAACTGGAAGCGGGGCAGTCTTTGCGGTTTGCTGCATCAACACGAACTTATATCTTG AGAAAGAATGATGCAGCTCTTTTTCCTCGTCCTCCACCTCCCTCAGAAATTAACCTACCACCCCCTCCTGATCCATCTGATGAAGAAGCTGTTGTAGCAT ATAATACTTTTCTGAATCGTTATGGTCTAACTAAGCCTGATCAACCAACTAAATCGAGTGAATCAAGTGGCTCATTAAGCAGAAGACATGATGACCAGCA GTTGGGGAGAGCTGCTAAGAGAATAAAAAAGACAAGGGTTGCTTTCAGGGATCAAGTTGGGGGTGAGCTGGTTCAAGTTGTTGGTTTTTCAGATGGTGCA GATGTAGAAACAGAGCCTGGTCCAATAGGTGTAAAAGAAGGAAGCCTTGTTGGAAAATACGAGTCTCTTGTACAGGTTACAGTAATACCCAAAGGTAAGG AACAATTCTCAGCAAAGGAACATAATGCTTCCCAAAAAGGAGTGACTAGTAGATTACAAGAAGTCTTGAATAAGGTCAAAACTACTACAAAAAGTGGGAT GTATGATGATCTTTATGGAGAATCATTTGCTGGAAAAGTGGGCTCTTCCTGGGCATATTCTTCTGATAGTTCTGTTGGTAATCTAGCTTCTCCAACAAAA GATGGCCAGGGGAATGCTATTGGTTCTTTGAGTGGAAAACCTGAAAATAACCCGAGCGCTTATGATGACAACGATGATGATGATTTATTTGGTGACTAG
AA sequence Show only first row Show all	>Potri.016G003800.5 pacid=42809726 polypeptide=Potri.016G003800.5.p locus=Potri.016G003800 ID=Potri.016G003800.5.v4.1 annot-version=v4.1 MYGRAGLERFKKAQSTEPFSVPVNSAPKTTTQPAVKTVSQPSVQYSQSKTQSQFRDQPYVAQKPAAPEAGPLLGHTQPVTQVGGGQSTWQPPDWAIEPRP GVYYLEVLKDGEVLDRISLDRRRHIFGRQIHTCDFVLDHQSVSRQHAAVIPHKNGSIFVIDLGSAHGTFVANERLTKDTPVELEAGQSLRFAASTRTYIL RKNDAALFPRPPPPSEINLPPPPDPSDEEAVVAYNTFLNRYGLTKPDQPTKSSESSGSLSRRHDDQQLGRAAKRIKKTRVAFRDQVGGELVQVVGFSDGA DVETEPGPIGVKEGSLVGKYESLVQVTVIPKGKEQFSAKEHNASQKGVTSRLQEVLNKVKTTTKSGMYDDLYGESFAGKVGSSWAYSSDSSVGNLASPTK DGQGNAIGSLSGKPENNPSAYDDNDDDDLFGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.016G003800 [exp]	0	1
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	1.73	0.8063
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.012G092400 [exp]	2.82	0.7547
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	11.31	0.7267
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	12.40	0.7182
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.012G081500 [exp]	13.78	0.7012
AT1G31910			GHMP kinase family protein (.1...		Potri.001G135500 [exp]	14.00	0.6961
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	19.39	0.7076
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	24.65	0.6952
AT5G43310			COP1-interacting protein-relat...		Potri.010G070200 [exp]	30.85	0.6653
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Potri.005G118200 [exp]	30.93	0.6732	SHI2,Pt-STY1.2

Compare expression of checked genes

Potri.016G003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.