Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03370 1378 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G50170 914 / 0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT3G59660 109 / 2e-24 C2 domain-containing protein / GRAM domain-containing protein (.1) AT1G22610 77 / 6e-14 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 71 / 3e-12 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 68 / 3e-11 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 66 / 9e-11 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 63 / 9e-10 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 63 / 1e-09 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 59 / 1e-08 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003200 [exp] 1825 / 0 AT1G03370 1372 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.015G083500 [exp] 1010 / 0 AT5G50170 1109 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Potri.013G127000 [exp] 107 / 7e-24 AT3G59660 867 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Potri.003G125900 [exp] 76 / 8e-14 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 76 / 1e-13 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 73 / 8e-13 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 72 / 1e-12 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.019G080000 [exp] 72 / 1e-12 AT1G22610 1442 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 69 / 2e-11 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001915 [exp] 1541 / 0 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10015665 [exp] 989 / 0 AT5G50170 1099 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10037679 [exp] 976 / 0 AT5G50170 1097 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10003910 [exp] 738 / 0 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10025600 [exp] 101 / 8e-22 AT3G59660 761 / 0.0 C2 domain-containing protein / GRAM domain-containing protein (.1) Lus10001538 [exp] 76 / 1e-13 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10009460 [exp] 75 / 2e-13 AT1G22610 627 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 75 / 2e-13 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 74 / 6e-13 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 71 / 4e-12 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0266 [poplar] [flax] PH PF02893 [poplar] [flax] GRAM GRAM domain CL0209 [poplar] [flax] Bet_v_1_like PF16016 [poplar] [flax] VASt VAD1 Analog of StAR-related lipid transfer domain
Representative CDS sequence Show only first row Show all	>Potri.016G003900.3 pacid=42810251 polypeptide=Potri.016G003900.3.p locus=Potri.016G003900 ID=Potri.016G003900.3.v4.1 annot-version=v4.1 ATGGGAGGATTGAGGCTTTTTGTTCGTGTGATAGAGGCAAGGAATTTGCCACCAACGGATCCAAATGGGCTAAGTGATCCATATGCCAAGTTGCGGTTAG GGAAGCAGAAGTGTAAGACCAAAGTGGTGAAGAAGAACTTGAACCCAAGTTGGGAAGAGGAGTTCAGTTTTAAAGTGGAGGACTTGAATGAGGATCTTGT AGTGTGTGTATTAGATGAAGACAAGTTCTTTAATGACGATTTTGTTGGGCTGATTAAGGTTCCTGTATCGCGAGTTTTTGATGCGGAAGATAAGTCTCTT GGCACTGCTTGGTACTCACTGCAACCCAAAAACAAGAAGTCTAAGATCAAGGAATGTGGTGAAATTCTTTTAAGTATATGTGTTTCTCAATCTTTTCCTG ACTTGAACTGCAATGGTTCGAGGAAGAATGTGGACATAATGCAATCTCCATCTAGGTCATTTAATGGGATGACCAACTCTTCTTCAGCTAGATCAGAAGA AACTGCTTCCTCTAAAGAAGACAAGTTTTTTGCACAGAAAAATTTAGCTGGCAGAATTGCTCAAATATTTAACAAAAATTCAGATGCGATTTCAGCCACT ACAAGTAGAAGCACTGAAATTTCAGAGCAATCAGAAACCGATGGATCTGAGGTTTGTGATGAGAAGGCTGAGGATCAGTCCTCTTCTGACAACTTTGAAG AACTTATGAAAGAGATGAAATCTAGAGATGTAGGAAGTGAAGTTCCAAAGAACCTACCAGGAGGAGTCCTTGTAGATCAATCGTACTTGATTGCAACCCC AGATTTAAACTCTCTTTTGTTTTCACCTGATTCGAGTTTTGCCAGATCATTGTCAGACTTCCTGGGAAATTCAGAACAGCAATTTGGTCCTTGGAAATTT GAGAATGGTAGTGGGAGCTTGAAAAGAGTAATTACTTATGTTAGGGCACCATCCAAGTTAGTTGGTGCTGTGAAAGCTAGTGAGGACCAGATTTATGTGA AAGTAGATGGGAAGACATTTGCTATTTTGAATTGTGTGAGCACTCCGGATGTTATGTATGGGAGCACCTTTAAAGTCGAATTGCTTTACTGCATTACACC TGGTCCTGAGTTGCCATCAGGAGAGGAAACTTCACATTTGGTTATATCCTGGCGCATGAATTTTTTACAGAGTACCATGTTTAAAAGCATGATAGAAAAT GGAGCCCGTGCAGGTCTAAAGGACAGCTTTGAGCAATTTTCAACGTTTTTATCTCAAACTGTTAAGCCAGTTGATTTGAAGGACATGGGATCTAGCAAGG AACAGGTTCTGGCTTCATTGAAGGCAGAACCCCAATCAGACAGGAAGCTGGCTGTACAGTATTTTGCTAACTTTACTGTAGTTTCTGCGTTTTTTATGGG ACTGTATGTGTTTGTGCACATCTGGCTAGCTGCACCAAGTGCAATTCAAGGGCTCGAGTTTCTCGGGCTTGACTTGCCAGATTCAATTGGTGAAGTCCTT GTATGTAGTGTCCTGGCTCTTCAGTGTGAAAGGGTGTTAGGGTTACTTTCACGCTTCATGCAGGCTAGAGCTCAAAAGGGCACTGATCATGGAGTCAAAG CACAAGGAGATGGCTGGCTGCTTACAGTTGCCTTGATCGAGGGAAGTCATTTGCCTACTGTTGATTCAAGCGGCTTCTGTGACCCATACGTGGTATTCAC CTGCAATGGGAAAACTAAAACAAGCTCTATCAAGTTTCAGAAATCTGATCCTCTGTGGAATGAGATATTCGAATTTGATGCCATGGATGACCCTCCTTCT GTGCTGGATGTGGATGTTTATGATTTTGATGGACCTTTTGATGAAGCCATGTCCTTGGGACATACAGAGATTAATTTTGTAAAATCTAATTTATCAGATT TAGCTGATGTGTGGGTTCCTCTTCAAGGAAAGTTAGCACAAGCATGTCAATCTAAGCTGCACTTACGGATTTTCTTGAACAATACAAGAGGTAGCAATGT TGTTAAAGAGTACTTAAGTAAGATGGAGAAAGAGGTGGGGAAGAAGATAAATGTGCGTTCTCCTCAAACAAATTCAGCCTTCCAAAAGGTTTTTGGGCTT CCACCAGAGGAATTCCTAATCAATGACTTCACCTGTCACTTGAAACGAAAGATGCCATTACAGGGTCGGCTGTTTCTGTCAGCAAGAATAATTGGATTCT ATGCAAATTTATTTCGGCAAAAGACTAAATTTTTCTTTCTTTGGGAGGACATAGAGGACATTCAAATTTATACTCCTACTCTATCATCAATGGGTAGTCC AGTTATTGTTATAACTCTCCGACAAGGCAAGGGTATGGACGCCAGGCATGGAGCAAAGAATATTGATGATGAAGGGAGGCTGAAGTTCCATTTCCAATCT TTTGTATCTTTTAATGTAGCACATAGGACAATCATGGCTTTGTGGAAGGCCAGATCATTGAGTCTTGAACAGAAGGTGCAAATAGTTGAAGAAGATTCAG AAACCAAAATCCTTCAAACGGAGGAGAGTGGGTCTTTCTTGGGTCTTGAGGATGTCAGCATGTCTGAGGTTTATGCTGCTTCATTTTCTGTCCCTACCAA TTTCGTAATGGAGATGTTTGGTGGGGGTGAATTGGATCGTAAAGTAATGGAGAAAGCTGGTTGTCTTAGCTATTCTTACACCCCATGGGAATCGGTGAAG ACTGATGTACATGAGAGGCAAATATACTACAGATTTGATAAGCGTATATCTCGTTTTGGAGGAGAGGTCACAAGTACACAGCAGAAATACCCCCTCTCTG ATAGGAAAGGTTGGCTTGTCGAAGAGGTTATGACTCTTCATGGAGTTCCACTGGGTGACTATTTTAATCTTCACCTGAGATATCAAGTTGAGGATTTTCC TTCAAGACTGAAAGGCTGTCATGTGCGTGTATCCATTGGAATTCAATGGCTGAAAAGCACCCGGCATCAAAAAAGGATTTCAAAGAACATTCTCTCAAAT CTGCAAGATCGCCTGAAGGTGATATTTAGTCTAGTCGAGAAGGAGTTTGTGAATAGATAA
AA sequence Show only first row Show all	>Potri.016G003900.3 pacid=42810251 polypeptide=Potri.016G003900.3.p locus=Potri.016G003900 ID=Potri.016G003900.3.v4.1 annot-version=v4.1 MGGLRLFVRVIEARNLPPTDPNGLSDPYAKLRLGKQKCKTKVVKKNLNPSWEEEFSFKVEDLNEDLVVCVLDEDKFFNDDFVGLIKVPVSRVFDAEDKSL GTAWYSLQPKNKKSKIKECGEILLSICVSQSFPDLNCNGSRKNVDIMQSPSRSFNGMTNSSSARSEETASSKEDKFFAQKNLAGRIAQIFNKNSDAISAT TSRSTEISEQSETDGSEVCDEKAEDQSSSDNFEELMKEMKSRDVGSEVPKNLPGGVLVDQSYLIATPDLNSLLFSPDSSFARSLSDFLGNSEQQFGPWKF ENGSGSLKRVITYVRAPSKLVGAVKASEDQIYVKVDGKTFAILNCVSTPDVMYGSTFKVELLYCITPGPELPSGEETSHLVISWRMNFLQSTMFKSMIEN GARAGLKDSFEQFSTFLSQTVKPVDLKDMGSSKEQVLASLKAEPQSDRKLAVQYFANFTVVSAFFMGLYVFVHIWLAAPSAIQGLEFLGLDLPDSIGEVL VCSVLALQCERVLGLLSRFMQARAQKGTDHGVKAQGDGWLLTVALIEGSHLPTVDSSGFCDPYVVFTCNGKTKTSSIKFQKSDPLWNEIFEFDAMDDPPS VLDVDVYDFDGPFDEAMSLGHTEINFVKSNLSDLADVWVPLQGKLAQACQSKLHLRIFLNNTRGSNVVKEYLSKMEKEVGKKINVRSPQTNSAFQKVFGL PPEEFLINDFTCHLKRKMPLQGRLFLSARIIGFYANLFRQKTKFFFLWEDIEDIQIYTPTLSSMGSPVIVITLRQGKGMDARHGAKNIDDEGRLKFHFQS FVSFNVAHRTIMALWKARSLSLEQKVQIVEEDSETKILQTEESGSFLGLEDVSMSEVYAASFSVPTNFVMEMFGGGELDRKVMEKAGCLSYSYTPWESVK TDVHERQIYYRFDKRISRFGGEVTSTQQKYPLSDRKGWLVEEVMTLHGVPLGDYFNLHLRYQVEDFPSRLKGCHVRVSIGIQWLKSTRHQKRISKNILSN LQDRLKVIFSLVEKEFVNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03370			C2 calcium/lipid-binding and G...		Potri.016G003900 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	1.73	0.8928
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Potri.005G113000 [exp]	2.82	0.8621
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G308600 [exp]	4.69	0.8434
AT5G63970			Copine (Calcium-dependent phos...		Potri.005G065700 [exp]	5.19	0.8647
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.014G136200 [exp]	6.78	0.8664	Pt-HPT2.1
AT1G16220			Protein phosphatase 2C family ...		Potri.004G066200 [exp]	7.54	0.8067
AT5G05570			transducin family protein / WD...		Potri.016G117800 [exp]	8.36	0.8170
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	12.32	0.8457
AT5G17680			disease resistance protein (TI...		Potri.019G069600 [exp]	14.89	0.8155
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385300 [exp]	18.33	0.8479

Compare expression of checked genes

Potri.016G003900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.