Plant FIBer expression Database

Potri.016G004200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47760 515 / 0 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1)
AT5G36700 424 / 8e-150 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
AT5G36790 424 / 8e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G180400
[exp]
427 / 7e-151 AT5G36700 514 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Potri.008G077400
[exp]
425 / 4e-150 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Potri.006G003501
[exp]
94 / 2e-24 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039102
[exp]
515 / 0 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1)
Lus10038761
[exp]
456 / 3e-163 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1)
Lus10026241
[exp]
424 / 2e-150 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10042429
[exp]
424 / 2e-149 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10038760
[exp]
306 / 1e-105 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1)
Lus10033024
[exp]
300 / 4e-103 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13242 Hydrolase_like HAD-hyrolase-like
Representative CDS sequence
>Potri.016G004200.1 pacid=42810012 polypeptide=Potri.016G004200.1.p locus=Potri.016G004200 ID=Potri.016G004200.1.v4.1 annot-version=v4.1
ATGAACACTGCAAAAAGAGCTGCTCAGCTTCTCTCAACTCAGAACATCAGGTCCCTCTTTGACTCTGTTGAAGCCTTTCTCTTTGACTGTGATGGTGTTA
TTTGGAAAGGTGATAAACTCATTGATGGGGTCTCTCAAACATTGGACTGGCTTCGTTCTAAGGGAAAGAAACTTGTTTTTGTGACCAACAATTCATTAAA
ATCAAGAATCCAATATGCCAAGAAGTTCCATTCACTTGGAATCTCTGTTGCTGAGGATGAGATATTCTCCTCCTCTTTCGCGGCGGCGATGTACTTAAAA
GTCAATAACTTTCCTCAGGAAAAGAAGGTTTATGTGATAGGCGGGGAAGGTATATTGGAAGAGCTACAGCTCGCGGGATATACAGGTCTTGGTGGCCCTG
AAGATGGTGAAAAACGAGTAGAGCTGAAACCAAATTCCCTCTTTGAACATGATAAGAGTGTTGGAGCGGTTGTGGTTGGAATAGACCCACGCATCAACTA
TTACAAGCTTCAGTATGGAACCTTATGCATACGTGAGAATCCTGGTTGCCTTTTTATTGCTACGAATCGTGATGCGGTGGGACATATGACTGATTTACAG
GAGTGGCCTGGTGCGGGCAGTATGGTTGCTGCCATGTGCGGTTCAACAGAAAGAGAGCCTATTGTAGTTGGAAAACCATCAACATTTATGATGGACTTCT
TATTACAAAAGTTTCACATCAATACCTCCAAAATGTGTATGGTGGGTGATAGATTAGATACTGATATATTATTTGGACAAAATGCTGGCTGCAAAACTCT
CCTAGTTCTTTCAGGCGTAACAACTCAAACCACTCTTCGAGATCCATCAAACAGTGTCCAGCCAGATTATTATACAAGCCAGGTGTCTGACTTGCTTCAC
TTGCTGGGACCATAA
AA sequence
>Potri.016G004200.1 pacid=42810012 polypeptide=Potri.016G004200.1.p locus=Potri.016G004200 ID=Potri.016G004200.1.v4.1 annot-version=v4.1
MNTAKRAAQLLSTQNIRSLFDSVEAFLFDCDGVIWKGDKLIDGVSQTLDWLRSKGKKLVFVTNNSLKSRIQYAKKFHSLGISVAEDEIFSSSFAAAMYLK
VNNFPQEKKVYVIGGEGILEELQLAGYTGLGGPEDGEKRVELKPNSLFEHDKSVGAVVVGIDPRINYYKLQYGTLCIRENPGCLFIATNRDAVGHMTDLQ
EWPGAGSMVAAMCGSTEREPIVVGKPSTFMMDFLLQKFHINTSKMCMVGDRLDTDILFGQNAGCKTLLVLSGVTTQTTLRDPSNSVQPDYYTSQVSDLLH
LLGP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47760 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase... Potri.016G004200
[exp]
0 1
AT5G30495 Fcf2 pre-rRNA processing prote... Potri.010G002100
[exp]
1.41 0.9048
AT4G22160 unknown protein Potri.004G004100
[exp]
3.00 0.8669
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Potri.001G359400
[exp]
3.16 0.8675
AT2G46580 Pyridoxamine 5'-phosphate oxid... Potri.002G173800
[exp]
4.24 0.8546
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.001G122700
[exp]
5.47 0.8555
AT3G12290 Amino acid dehydrogenase famil... Potri.011G098600
[exp]
7.34 0.8214
AT1G43900 Protein phosphatase 2C family ... Potri.005G186001
[exp]
8.66 0.8244
AT4G11980 ATNUDX14, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.003G118300
[exp]
9.53 0.8491
AT3G18140 Transducin/WD40 repeat-like su... Potri.016G052800
[exp]
9.79 0.8483
AT4G28440 Nucleic acid-binding, OB-fold-... Potri.007G137600
[exp]
9.94 0.8402

Potri.016G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.