Plant FIBer expression Database

Potri.016G004401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G065201
[exp]
42 / 1e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G004401.1 pacid=42810196 polypeptide=Potri.016G004401.1.p locus=Potri.016G004401 ID=Potri.016G004401.1.v4.1 annot-version=v4.1
ATGAAGTTCAATAAAGAGACCAAGATGCTTGCCATTGTGACAATCATTGCGCTACTGATAACATCAGCATCAGCTAAAAGGGGCGGAGGTGGTAGCATTG
GTGGTGGAAGTAGAGGTGGCAGCTCAGCAGGAGGTGGCACCCGAGCAAGAGGAGGTAGCCCTGGATTACAAAGCGGAGGGGTCCTCTCTGGAGGGAGGGG
TACAACTATCCCTGTTGGAGCTGGTGGTGTTGTGCCAATAGTAAGGGGTGGTACCCATGCCGGAGGACGTTCTGGTTCTGCCTCTCTTGCAAGGGATGCT
GCCCCCATGTTTTTGAATGCTCTTGTAACTCTTTGGATCTTCTTCTGA
AA sequence
>Potri.016G004401.1 pacid=42810196 polypeptide=Potri.016G004401.1.p locus=Potri.016G004401 ID=Potri.016G004401.1.v4.1 annot-version=v4.1
MKFNKETKMLAIVTIIALLITSASAKRGGGGSIGGGSRGGSSAGGGTRARGGSPGLQSGGVLSGGRGTTIPVGAGGVVPIVRGGTHAGGRSGSASLARDA
APMFLNALVTLWIFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G004401
[exp]
0 1
AT3G26744 bHLH SCRM, ATICE1, I... SCREAM, A. THALIANA INDUCER OF... Potri.015G105200
[exp]
15.19 0.7216
AT5G39790 5'-AMP-activated protein kinas... Potri.017G125400
[exp]
15.49 0.7520
AT1G22750 unknown protein Potri.005G198600
[exp]
18.43 0.6741
AT5G63060 Sec14p-like phosphatidylinosit... Potri.015G080100
[exp]
19.00 0.7013
AT1G52340 SIS4, SDR1, ISI... SHORT-CHAIN DEHYDROGENASE REDU... Potri.001G024300
[exp]
20.19 0.7323 ABA2.1
AT5G16010 3-oxo-5-alpha-steroid 4-dehydr... Potri.008G013100
[exp]
22.84 0.7664
AT3G23490 CYN cyanase (.1) Potri.010G068200
[exp]
28.98 0.7075 Pt-CYN.1
AT1G17100 SOUL heme-binding family prote... Potri.001G067100
[exp]
34.35 0.7293
AT5G17570 TatD related DNase (.1) Potri.013G073800
[exp]
38.61 0.6960
AT2G18630 Protein of unknown function (D... Potri.005G127300
[exp]
40.91 0.7301

Potri.016G004401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.