Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26590 988 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 986 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1) AT4G10770 838 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT1G09930 810 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 802 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G27730 799 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT5G53520 797 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT5G53510 775 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G16370 746 / 0 ATOPT3 oligopeptide transporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003700 [exp] 1208 / 0 AT4G26590 863 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 1040 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G370100 [exp] 1030 / 0 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.003G145500 [exp] 862 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 828 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.002G109300 [exp] 825 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.012G019500 [exp] 815 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.005G150400 [exp] 814 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.012G019700 [exp] 814 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022543 [exp] 1053 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 1032 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 1025 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 1024 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 1023 / 0 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032585 [exp] 987 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 965 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10032586 [exp] 957 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 944 / 0 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10014885 [exp] 924 / 0 AT4G26590 961 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.016G004800.2 pacid=42809115 polypeptide=Potri.016G004800.2.p locus=Potri.016G004800 ID=Potri.016G004800.2.v4.1 annot-version=v4.1 ATGGAGCACGCAGAGACTAATGGTAAAGGGATTCCTCTTTCAAACAAGGTCGAGGTGCTTGATGAGAAAGAAGAGGCAAACGATTCGCCAATCGAGCAAG TTAGGCTCACAGTTCCGATTACAGACGATCCAACATTACCATGCTTGACTTTTCGAACATGGGTCTTGGGGATCACAAGTTGTGCTCTTCTGGCATTTGC CAATCAGTTCTTCGGTTACCGTCAAAATATACTCTCTGTAACATCAGTTTCAGCCCAGATTGTAGTGCTGCCAGTAGGGAGGCTCATGGCAGCAATTTTA CCAAACAAAGTTATCCGTTTTCCAAGAACGAAATGGTCATTTTCTTTGAATCCAGGGCCTTTCAACTTAAAAGAACATGTCCTGATCACAATATTTGCAA ATTCTGGATCAAATCCTGTGTATGCAGTGGGTATTATCACCATTGTCAAGGCATTTTATCATGGTAACATAGACGCAGTACCGGCTATGTTATTGTCGCA GACGACGCAGCTGTTAGGATATGGATGGGCTGGAATCTTCAGGAAGTTCCTTGTTGATTCCCCTTATATGTGGTGGCCTTCCAATCTGGTTCAAGTTTCC CTCTTTAGGGCATTGCATGAAGTTGAGATCAGGCGTAAGGGAGGCCTGACAAGGCTGCAGTTCTTCCTCGTGGTCCTTATATCAAGCTTCGCGTACTATA TAGTTCCCGGCTATCTCTTCCAATCTATAACTGCTCTTTCCTTTGTTTGTTGGATATGGAAAGATTCAGTCACTGCCCAGCAAATTGGTTCTGGTCTTCA TGGCCTTGGTGTTGGCTCGTTCGCCTTTGATTGGTCAACTGTAGCTGGTTTTTTGGGATCTCCATTGGCCACTCCGGGATTTGCTATTATCAACATATTA TTTGGTTACATCATAATTCTCTACATCATAATCCCCATATCTTACTGGACAAACTCATACAATGCCAAACGTTTTCCCATTTTCTCTTCACATGTTTTCG ATGCTAATGGAAAACCCTACGATGTTTCAACAGTTCTAAATGAGACAACCTTTGAATTCAATAGAGCAGGGTATGATGGCTACAGCAAAGTCAACCTAAG TATCTTCTTTGTTTACACTTATGGTCTAAGCTTTGCCATATTGGCTGCTACATTAACTCATGTAGCACTTTTCCACGGAAGGGAGATTTGGTATCAAACA AAAGAAACATTGAAAGACAAGTATGCTGATGTCCACACTAGGATAATGAAGAGAAATTATGAGGCTGTTCCTCAATGGTGGTTTCATATAATCTTGATTG TAGTAACTGGACTAGCCCTGCTTACTTGTGAAGGCTTTGGTAGACAGTTACAACTTCCTTACTGGGGTGTCCTGCTAGCGATTGGCTTGGCTTTCATTTT CACTCTTCCCATTGGTGTTATTACAGCAACTACGAACCAGCAACCGGGACTCAACGTTATCACTGAGCTAATAATCGGTTACATGTATCCGGGGAGACCT CTTGCAAATATTACTTTCAAGACCTATGGCTACATTAGCATGTCTCAAGCAATCATGTTCCTCTCAGACTTCAAGCTGGGACATTACATGAAAATTCCCC CAAAGTCCATGTTTGTTGTCCAGTTAGTAGGGACTGTAATTGCATCTTCAGTTTACTTCGGCACGGCCTGGTGGCTCCTTACCTCGGTGGAAAACATCTG CAATCCATCAAGATTGCCAGAAGGAAGTCCATGGACATGTCCAGGAGACGATGTTTTCTACAATGCCTCCATCATTTGGGGCGTGGTTGGACCACTGCGA ATGTTCGGACGTCTTGGTTTGTACTCGAAGATGAACTATTTCTTCCTCATTGGCCTTCTCGCGCCGGTGCCAGTGTGGATACTCTCTCGCATGTTCCCTG AGAAGAAATGGATCAAACTCATTAATGTGCCTATTATCATAGGAGGCACAGGAGGCATGCCATCAGCCAGGGCTGTGAACTATATGTGCTGGTTTGCTGT AGGCATTTTCTTCAATTTTGTTGTCTACAAGAGATATAGAGGATGGTGGGTTAGGCACAACTACATCCTATCAGCAGGGTTAGATGCTGGAGTTGCTTTC CTAGCCATTTTACTCTATTTTACACTACAAATCAAGGACATTAATGGACCAACCTGGTGGGGCTTGGAGCTGAGTGATCATTGTCCTCTGGCAACTTGTC CTACTGCCCCTGGCTTTCAGGTTGAGGGATGCCCTGTTTTCCACTAA
AA sequence Show only first row Show all	>Potri.016G004800.2 pacid=42809115 polypeptide=Potri.016G004800.2.p locus=Potri.016G004800 ID=Potri.016G004800.2.v4.1 annot-version=v4.1 MEHAETNGKGIPLSNKVEVLDEKEEANDSPIEQVRLTVPITDDPTLPCLTFRTWVLGITSCALLAFANQFFGYRQNILSVTSVSAQIVVLPVGRLMAAIL PNKVIRFPRTKWSFSLNPGPFNLKEHVLITIFANSGSNPVYAVGIITIVKAFYHGNIDAVPAMLLSQTTQLLGYGWAGIFRKFLVDSPYMWWPSNLVQVS LFRALHEVEIRRKGGLTRLQFFLVVLISSFAYYIVPGYLFQSITALSFVCWIWKDSVTAQQIGSGLHGLGVGSFAFDWSTVAGFLGSPLATPGFAIINIL FGYIIILYIIIPISYWTNSYNAKRFPIFSSHVFDANGKPYDVSTVLNETTFEFNRAGYDGYSKVNLSIFFVYTYGLSFAILAATLTHVALFHGREIWYQT KETLKDKYADVHTRIMKRNYEAVPQWWFHIILIVVTGLALLTCEGFGRQLQLPYWGVLLAIGLAFIFTLPIGVITATTNQQPGLNVITELIIGYMYPGRP LANITFKTYGYISMSQAIMFLSDFKLGHYMKIPPKSMFVVQLVGTVIASSVYFGTAWWLLTSVENICNPSRLPEGSPWTCPGDDVFYNASIIWGVVGPLR MFGRLGLYSKMNYFFLIGLLAPVPVWILSRMFPEKKWIKLINVPIIIGGTGGMPSARAVNYMCWFAVGIFFNFVVYKRYRGWWVRHNYILSAGLDAGVAF LAILLYFTLQIKDINGPTWWGLELSDHCPLATCPTAPGFQVEGCPVFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.016G004800 [exp]	0	1
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	15.58	0.7943
AT5G66120			3-dehydroquinate synthase, put...		Potri.005G110900 [exp]	18.97	0.7509
AT2G20780		AtPLT4	Major facilitator superfamily ...		Potri.013G135200 [exp]	40.54	0.7713
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	44.19	0.7709	CAld5H/F5H4,Pt-FAH1.4
AT2G28320			Pleckstrin homology (PH) and l...		Potri.009G011200 [exp]	44.72	0.7673
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.014G164400 [exp]	45.86	0.6444
AT5G11960			Protein of unknown function (D...		Potri.006G226000 [exp]	48.51	0.6952
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	51.57	0.7663	Pt-4CL.3,Ptr4CL3
AT3G08650			ZIP metal ion transporter fami...		Potri.006G111200 [exp]	54.66	0.7296
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	58.78	0.7603

Compare expression of checked genes

Potri.016G004800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.