Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47750 842 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 707 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 702 / 0 D6PK D6 protein kinase (.1) AT2G44830 624 / 0 Protein kinase superfamily protein (.1) AT3G27580 596 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G40030 579 / 0 Protein kinase superfamily protein (.1) AT1G79250 565 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 546 / 0 AGC1.5 AGC kinase 1.5 (.1.2.3) AT2G36350 544 / 0 Protein kinase superfamily protein (.1) AT3G52890 542 / 0 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003800 [exp] 1075 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 689 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.014G047500 [exp] 686 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 674 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 607 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 577 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 576 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 574 / 0 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 567 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039105 [exp] 803 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 797 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 785 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10022534 [exp] 691 / 0 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 654 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 645 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 575 / 0 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 569 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 543 / 0 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 541 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G004900.2 pacid=42810645 polypeptide=Potri.016G004900.2.p locus=Potri.016G004900 ID=Potri.016G004900.2.v4.1 annot-version=v4.1 ATGGCCTCAAAAACTGGTAGCAAAGCATCCTCAAAACAACACCAGAAAACAGCTGGTTTTCAAAGAGCGGATGTCACTGATCTCAGGCATTTGTCTTTGC AGGGCTCAAAGCCGAGCAAGCCCCAGCTGATTAATCATGAGCAGGTGCAATCTTCAGTAGAAAATATGCCAAAGCAGGTTTTGTTAGAAGCTTCTGAAAA TAAAAAGCTTCCGAATTCTAATCAAGAGGGGGCTTCTGATTCTTTGAGTAATACGTTGGAATCCAATTCTTCCTTGCCCTGTCTTGAACAATCATCAATT GAGGTGGATTCTATTGTCAATGAGACTAGAGGCTCACAGGATGTTTCTGTTGATCAAGAGAAGAAAATATCAGAATATGGAAGTGTAAAAAACAGCTCGG TATCTGCCAAAGTTAGTGATGGAACCAGCAGCCTGGCTAAGACGAGTGGAAGTGCCAAAATGAGTGACCGTGTTGATTATGCTGAGAGTGGCAAGAGGAG TTTGTGTAGAGGAAGCACCAGCAGCGATGTTAGTGATGAAAGCACTTGTAGTAGCTTTAGTAGTAGCATCAACAAACCTCACAAAGCAAATGACTTGAGA TGGGAAGCCATCCAAGCTGTTAGAGCAAAAGATGGGGTTTTAGGTTTGAGTCATTTTAGACTGCTGAAGAGGTTGGGTTGTGGGGATATTGGTAGTGTAT ACCTGTCTGAGCTGAGTGGAACTAAGTGTTATTTTGCAATGAAGGTAATGGACAAAGGTTCTCTTGCCAGTCGTAAGAAGCTGCTTCGGGCTCAGACAGA GAGAGAAATATTGCAATCTTTGGACCACCCTTTCCTTCCGTCGCTCTACACCCACTTTGAAACAGATAAATTTTCATGTCTGGTAATGGAGTTCTGTCCT GGAGGAGATTTGCACACTCTTAGGCAGAGGCAGCCAGGGAAACACTTTCTGGAGCAGGCAGTAAAATTTTATGTAGCAGAGGTTCTGCTAGCTTTGGAAT ATTTGCATATGCTTGGGATCATTTACCGTGATCTTAAGCCAGAGAATGTCCTTGTGAGGGATGATGGACATATAATGCTCTCCGACTTCGACCTTTCCCT CCGTTGTGCTGTGAGCCCAACACTTGTCAAAACAGCATCTCTTGAGGCTGACCCATTTCGAAAGAACCCTGTTTACTGTGTTCAGCCAGCTTGTATCGAG CCTTCATGCATCCAGCCATCCTGTGTTGCTCCTACAACATGCTTTGGGCCCCGCCTCTTTTCTAGCAAGTCCAAGAAGGATAGGAAACCCAAAAATGAAC TAGGAAATCAAGTCAGTCCATTACCTGAGCTCATAGCAGAGCCAACAGATGCAAGGTCAATGTCTTTTGTTGGAACCCACGAGTATTTGGCACCTGAGAT CATCAAGGGTGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATTTTTCTATATGAACTCTTATTCGGGAAAACTCCCTTCAAGGGATCTGGA AACCGAGCCACATTGTTCAATGTTGTTGGCCAGCCTCTTCGATTCCCAGAATCACCAGTCGTCAGTTTTGCAGCTAGGGATCTCATAAGGGGTTTGCTTG TAAAAGAACCACAGCATAGATTAGCATCCAAACGAGGCGCCACTGAAATAAAGCAACACCCCTTCTTTGAAGGCGTGAATTGGGCATTAATACGCTGTGC TACCCCACCCGAGATCCCTAAGCCAGTTGAGATTGAGCGGATACCTGCCCCAGCATCAACAAGTGAAAAGGCCACAACAGTTGCAGCTGCTCCTGGTCAA AAAGGTTCTGATAATTACCTGGAGTTTGATTTCTTTTAG
AA sequence Show only first row Show all	>Potri.016G004900.2 pacid=42810645 polypeptide=Potri.016G004900.2.p locus=Potri.016G004900 ID=Potri.016G004900.2.v4.1 annot-version=v4.1 MASKTGSKASSKQHQKTAGFQRADVTDLRHLSLQGSKPSKPQLINHEQVQSSVENMPKQVLLEASENKKLPNSNQEGASDSLSNTLESNSSLPCLEQSSI EVDSIVNETRGSQDVSVDQEKKISEYGSVKNSSVSAKVSDGTSSLAKTSGSAKMSDRVDYAESGKRSLCRGSTSSDVSDESTCSSFSSSINKPHKANDLR WEAIQAVRAKDGVLGLSHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPSLYTHFETDKFSCLVMEFCP GGDLHTLRQRQPGKHFLEQAVKFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTASLEADPFRKNPVYCVQPACIE PSCIQPSCVAPTTCFGPRLFSSKSKKDRKPKNELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSG NRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEIERIPAPASTSEKATTVAAAPGQ KGSDNYLEFDFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.016G004900 [exp]	0	1
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.002G116400 [exp]	6.70	0.7736
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.005G219500 [exp]	13.56	0.6783	Pt-WRKY21.1
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	14.42	0.7534
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	19.74	0.7304
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.009G080200 [exp]	34.46	0.7236
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.003G068700 [exp]	37.50	0.7115
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Potri.007G139800 [exp]	44.89	0.6561	Pt-MPK6.1
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.019G033800 [exp]	46.98	0.6381
AT2G36330			Uncharacterised protein family...		Potri.012G079800 [exp]	60.24	0.6700
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	63.16	0.6809

Compare expression of checked genes

Potri.016G004900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.