Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SSH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47730 500 / 2e-179 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G55840 466 / 5e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT3G24840 103 / 3e-24 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 99 / 1e-22 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G47510 94 / 3e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 92 / 2e-20 ATSFH3 SEC14-like 3 (.1.2.3) AT2G21520 92 / 4e-20 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 92 / 4e-20 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 91 / 6e-20 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 90 / 1e-19 ATSFH12 SEC14-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004000 [exp] 644 / 0 AT5G47730 497 / 3e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G369400 [exp] 492 / 3e-176 AT1G55840 466 / 4e-166 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 100 / 8e-23 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G119700 [exp] 96 / 1e-21 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.005G230500 [exp] 95 / 4e-21 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G076200 [exp] 94 / 4e-21 AT5G47510 397 / 1e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.007G020300 [exp] 94 / 5e-21 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.011G168300 [exp] 94 / 7e-21 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.004G157700 [exp] 94 / 8e-21 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038752 [exp] 541 / 0 AT5G47730 489 / 4e-175 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10039106 [exp] 505 / 0 AT5G47730 459 / 2e-163 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10043160 [exp] 417 / 1e-143 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016628 [exp] 409 / 2e-143 AT1G55840 415 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 400 / 1e-140 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022533 [exp] 353 / 7e-123 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10022790 [exp] 103 / 6e-24 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028938 [exp] 99 / 1e-22 AT5G47510 422 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10007464 [exp] 98 / 2e-22 AT5G47510 421 / 5e-146 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10008360 [exp] 99 / 3e-22 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G005100.1 pacid=42809230 polypeptide=Potri.016G005100.1.p locus=Potri.016G005100 ID=Potri.016G005100.1.v4.1 annot-version=v4.1 ATGGGGACTGTTTCACAGGATGCAATCAACCAGTTTAAGGCATTGATGGATCAAGTTGAGGAGCCATTGAAGAGAACTTATCAGACTGTCCATCAAGGAT ATCAAGCTGAAACGCTGGCGCGTTTTCTAAAAGCTAGAGAATGGAATGTTACCAAAGCCCATAAAATGTTACTGGATTGTTTGAACTGGAGGGTACACAA TGAGATCGACAATATATTAATGAAACCCATAGTTCCAACTGATTTGTACAGAGCAGTGCGTGATTCCCATCTCATAGGAATGTCAGGTTACTCCCGAGAG GGGCTTCCTGTATTTGCTCATGGTGTTGGGCTCAGCACATATGACAAAGCATCTGTCCACTACTATATGCAGTCTCACATTCAAATCAATGAATATCGGG ACCGCATTGTTTTGCCTACCGCATCAAAAAAGTATGGGCGACCAATAACAACCGGCGTAAAGGTTTTGGATATGTCTGGCCTAAAGCTTTCAGCACTGAA CCAAATAAAGATGGTGACCCTCATTTCAACTATTGATGACTTGAACTACCCAGAGAAAACACATACATATTACATTGTAAATGCCCCATATGTATTTTCA GCTTGTTGGAAGGTTGTCAAGCCTCTGCTGCAGGAGAGGACAAGAAAAAAAATTCAGGTGTTGTCTGGAAACGGGAGAGATGAGCTGTTGAAGATAATGG ATTATGCATCTCTTCCACATTTCTGTAAAAGAGAAGGGTCTGGATCATCTCGACATTCTGGGTATGCAAATGACAACTGCTTTTCCTTGGATCATCCCTT TCATCAACAGCTATACAACTACGTCAAGCAGAAATCTTTAGAGAGTGAACCTTCTCAACCAATCAAACAAGGGTCTTTCCACGTGGATCTGCCTGAACCA GCTGTCGAAGGAATGGAGATAGCTAAAACAATTGAATCCCAGATGCATAATTTTGAGAAAAGGAATGGGGTTTCTGGGCCCCTGAATGGCCTCAAAATCA ATGACGACTCTGACCACAGAACTACGCATTGCCCGTGA
AA sequence Show only first row Show all	>Potri.016G005100.1 pacid=42809230 polypeptide=Potri.016G005100.1.p locus=Potri.016G005100 ID=Potri.016G005100.1.v4.1 annot-version=v4.1 MGTVSQDAINQFKALMDQVEEPLKRTYQTVHQGYQAETLARFLKAREWNVTKAHKMLLDCLNWRVHNEIDNILMKPIVPTDLYRAVRDSHLIGMSGYSRE GLPVFAHGVGLSTYDKASVHYYMQSHIQINEYRDRIVLPTASKKYGRPITTGVKVLDMSGLKLSALNQIKMVTLISTIDDLNYPEKTHTYYIVNAPYVFS ACWKVVKPLLQERTRKKIQVLSGNGRDELLKIMDYASLPHFCKREGSGSSRHSGYANDNCFSLDHPFHQQLYNYVKQKSLESEPSQPIKQGSFHVDLPEP AVEGMEIAKTIESQMHNFEKRNGVSGPLNGLKINDDSDHRTTHCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.016G005100 [exp]	0	1	Pt-SSH1.1
AT5G47070			Protein kinase superfamily pro...		Potri.003G085300 [exp]	5.91	0.8517
AT1G32350		AOX1D	alternative oxidase 1D (.1)		Potri.003G103900 [exp]	14.96	0.8584
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.008G031800 [exp]	16.12	0.8103	NAC047,NAC2.2
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	18.73	0.8545
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	26.32	0.8479
AT1G29290			unknown protein		Potri.011G070500 [exp]	28.56	0.8389
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	29.69	0.8508
AT3G16565			alanine-tRNA ligases;nucleic a...		Potri.010G024900 [exp]	38.67	0.8198
AT1G27100			Actin cross-linking protein (....		Potri.010G035100 [exp]	43.26	0.8161
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	44.09	0.8432	EDS1.2

Compare expression of checked genes

Potri.016G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.